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[194171_s_at]

Description C57627_rc /REP_DB=TREMBL Accession /GB=C57627 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk306f8 : 3prime end, single read.
Cluster 6grp_total > 74      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.6
(-3)
A 		2.3
(3)
A 		1.1
(-1.2)
A 		2
(1.9)
A 		2
B 1.2
(-3)
A 		9
(-0.3)
A 		4.6
(-1.8)
A 		18.3
(3)
A 		17
C 5.4
(-1.7)
A 		4.6
(-2)
A 		1.6
(-3)
A 		18.8
(3)
A 		17
avr 2.4
(-3) 		5.3
(-1.4) 		2.4
(-3) 		13
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.7
(-2.4)
A 		2.2
(-3)
A 		14.9
(-0)
A 		8.2
(-1.6)
A 		5.2
(-2.3)
A 		27.8
(3)
A 		26
B 3.6
(-2.1)
A 		4.3
(-1.9)
A 		1.3
(-3)
A 		17
(3)
A 		3.2
(-2.3)
A 		1.6
(-2.9)
A 		16
C 1.2
(-3)
A 		11.9
(0.8)
A 		10.4
(0.3)
A 		18.1
(3)
A 		7.8
(-0.7)
A 		1.4
(-2.9)
A 		17
avr 3.2
(-3) 		6.1
(-1.4) 		8.9
(0.1) 		14.4
(3) 		5.4
(-1.8) 		10.3
(0.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.2
(-3)
A 		0.5
(3)
A 		0.3
(-1)
A 		0.3
(-1)
A 		0
B 0.4
(-3)
A 		2.2
(0.1)
A 		1.1
(-1.8)
A 		3.9
(3)
A 		4
C 1.8
(-0.2)
A 		1.3
(-1.4)
A 		0.6
(-3)
A 		3.2
(3)
A 		3
avr 0.8
(-2.7) 		1.3
(-1) 		0.7
(-3) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		0.8
(-3)
A 		3.3
(-0.5)
A 		2.1
(-1.7)
A 		1.6
(-2.2)
A 		6.8
(3)
A 		6
B 1.3
(-1.6)
A 		1.4
(-1.4)
A 		0.3
(-3)
A 		4.5
(3)
A 		1.3
(-1.6)
A 		0.6
(-2.6)
A 		4
C 0.5
(-3)
A 		3.6
(3)
A 		2.6
(1.1)
A 		3.6
(3)
A 		2.5
(0.9)
A 		0.5
(-3)
A 		3
avr 0.9
(-3) 		1.9
(-0.6) 		2.1
(-0.1) 		3.4
(3) 		1.8
(-0.8) 		2.6
(1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194171_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27668
Sequence Type Exemplar sequence
Representative Public ID C57627 NCBI
Target Description C57627_rc /REP_DB=TREMBL Accession /GB=C57627 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk306f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078118 NCBI Caenorhabditis elegans T10B10.9 (T10B10.9) mRNA, complete cds. 11/11 A 
SNAP00000009608 ENSEMBL cdna:SNAP chromosome:CEL140:X:15164395:15164704:1 11/11 None
T10B10.9.2 ENSEMBL cdna:known chromosome:CEL140:X:15164324:15164891:1 gene:T10B10.9 11/11 A 
T10B10.9.1 ENSEMBL cdna:known chromosome:CEL140:X:15164324:15164778:1 gene:T10B10.9 11/11 A 
T10B10.9.3 ENSEMBL cdna:known chromosome:CEL140:X:15164324:15164892:1 gene:T10B10.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15164449-15164758(+) 66.05 66.05
Public Domain and Genome References
Gene Title
Ensembl T10B10.9
Entrez Gene 181609 Entrez gene
SwissProt Q9U374 EMBL-EBI
WormBase CE23964 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54309 Hypothetical protein T10B10.9 [Caenorhabditis elegans] ref|NP_510519.1| T10B10.9 [Caenorhabditis elegans] 8.0E-50
blast CAB54309 Hypothetical protein T10B10.9 [Caenorhabditis elegans] ref|NP_510519.1| T10B10.9 [Caenorhabditis elegans] 9.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009608 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:194171_S_AT
ggatttattctcgtcagagaaaattttctcccgaatgtgactaacgacgaacttctggtc
atcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacccact
ggaaaaggatcgttcgtccagcca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTATTCTCGTCAGAGAAAATT 29 511 120 Antisense
AGAAAATTTTCTCCCGAATGTGACT 168 71 137 Antisense
GAAAATTTTCTCCCGAATGTGACTA 507 353 138 Antisense
AATTTTCTCCCGAATGTGACTAACG 98 175 141 Antisense
TTTTCTCCCGAATGTGACTAACGAC 583 675 143 Antisense
TTCTCCCGAATGTGACTAACGACGA 605 667 145 Antisense
CTCCCGAATGTGACTAACGACGAAC 655 233 147 Antisense
CCCGAATGTGACTAACGACGAACTT 599 259 149 Antisense
CGAATGTGACTAACGACGAACTTCT 600 251 151 Antisense
ACACCCACTGGAAAAGGATCGTTCG 414 107 231 Antisense
TGGAAAAGGATCGTTCGTCCAGCCA 655 545 239 Antisense
Sequence Source Affymetrix Proprietary Database