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[194165_s_at]

Description AU116710_rc /REP_DB=TREMBL Accession /GB=AU116710 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk748a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 09      6grp_highest_sub > Cu      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 294.3
(-1.9)
P 		251
(-3)
P 		333.3
(-0.8)
P 		477
(3)
P 		226
B 279.5
(-3)
P 		328.6
(-2.1)
P 		305.4
(-2.5)
P 		612.5
(3)
P 		333
C 300.9
(-3)
P 		407.8
(-0.5)
P 		369.7
(-1.4)
P 		556.7
(3)
P 		256
avr 291.6
(-3) 		329.1
(-2.1) 		336.1
(-2) 		548.7
(3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 729
1 2 3 4 5 6 range
A 423.4
(-1.4)
P 		258.2
(-3)
P 		395.5
(-1.7)
P 		317.9
(-2.4)
P 		890.8
(3)
P 		838.3
(2.5)
P 		633
B 559.7
(-1.4)
P 		452.6
(-2.5)
P 		404.3
(-3)
P 		528.4
(-1.7)
P 		711.7
(0.2)
P 		987.4
(3)
P 		583
C 404
(-2.1)
P 		429.8
(-1.8)
P 		300.7
(-3)
P 		429.4
(-1.8)
P 		828.6
(1.8)
P 		955.1
(3)
P 		654
avr 462.4
(-2) 		380.2
(-2.9) 		366.8
(-3) 		425.2
(-2.4) 		810.4
(1.8) 		926.9
(3) 		560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 107.1
(3)
P 		54.5
(-3)
P 		87.1
(0.7)
P 		69.8
(-1.3)
P 		53
B 89.1
(-1.2)
P 		81.1
(-2)
P 		70.8
(-3)
P 		130.5
(3)
P 		60
C 99.6
(-2)
P 		117.2
(1)
P 		128.8
(3)
P 		93.9
(-3)
P 		35
avr 98.6
(3) 		84.3
(-3) 		95.6
(1.7) 		98.1
(2.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 78.1
(-3)
P 		91.8
(-2.6)
P 		86.1
(-2.7)
P 		80.6
(-2.9)
P 		268.8
(3)
P 		204.1
(1)
P 		191
B 194.7
(-0.9)
P 		150.6
(-1.8)
P 		98.2
(-3)
P 		140
(-2.1)
P 		289.1
(1.2)
P 		368.2
(3)
P 		270
C 149.7
(-1.2)
P 		131.1
(-1.7)
P 		76.5
(-3)
P 		86.4
(-2.8)
P 		268.1
(1.7)
P 		319.7
(3)
P 		243
avr 140.8
(-1.5) 		124.5
(-1.9) 		86.9
(-3) 		102.3
(-2.6) 		275.3
(2.4) 		297.3
(3) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194165_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28059
Sequence Type Exemplar sequence
Representative Public ID AU116710 NCBI
Target Description AU116710_rc /REP_DB=TREMBL Accession /GB=AU116710 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk748a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060853 NCBI Caenorhabditis elegans Cytokinesis, Apoptosis, RNA-associated family member (car-1) (car-1) mRNA, complete cds. 11/11 None
Y18D10A.17.2 ENSEMBL cdna:known chromosome:CEL140:I:12912584:12914349:1 gene:Y18D10A.17 11/11 None
Y18D10A.17.1 ENSEMBL cdna:known chromosome:CEL140:I:12912591:12914349:1 gene:Y18D10A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12913747-12914034(+) 85.85 85.85
Public Domain and Genome References
Gene Title
Gene Symbol car-1
Ensembl Y18D10A.17
Entrez Gene 173158 Entrez gene
SwissProt Q9XW17 EMBL-EBI
WormBase CE21413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22317 Hypothetical protein Y18D10A.17 [Caenorhabditis elegans] ref|NP_493254.1| Cytokinesis, Apoptosis, RNA-associated family member (car-1) [Caenorhabditis elegans] 1.0E-144
blast CAE63508 Hypothetical protein CBG07987 [Caenorhabditis briggsae] 1.0E-131
blast AAH45423 Hypothetical protein MGC55673 [Danio rerio] ref|NP_956465.1| hypothetical protein LOC393140 [Danio rerio] 3.0E-38
Sequence
Target Sequence 
>C. ELEGANS:194165_S_AT
cttgtctcttctcaactattggcgtgttataagaaacccgttaattatttagaaatctcg
tacgattcaatgcgggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTCTCTTCTCAACTATTGGCGT 603 217 110 Antisense
TTGTCTCTTCTCAACTATTGGCGTG 164 707 111 Antisense
TGTCTCTTCTCAACTATTGGCGTGT 93 559 112 Antisense
GTCTCTTCTCAACTATTGGCGTGTT 434 469 113 Antisense
TCTCTTCTCAACTATTGGCGTGTTA 262 613 114 Antisense
TCTTCTCAACTATTGGCGTGTTATA 472 617 116 Antisense
TTCTCAACTATTGGCGTGTTATAAG 606 691 118 Antisense
TATTGGCGTGTTATAAGAAACCCGT 208 663 126 Antisense
GTTAATTATTTAGAAATCTCGTACG 75 443 149 Antisense
GAAATCTCGTACGATTCAATGCGGG 202 363 161 Antisense
AATCTCGTACGATTCAATGCGGGCC 445 169 163 Antisense
Sequence Source Affymetrix Proprietary Database