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[194164_s_at]

Description AV198677_rc /REP_DB=TREMBL Accession /GB=AV198677 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk347h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 98      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 79      6grp_total > 96      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1042
1 2 3 4 range
A 1298.1
(3)
P 		405.6
(-2.9)
P 		395
(-3)
P 		811.5
(-0.2)
P 		903
B 1354.7
(2.5)
P 		773.1
(-1.4)
P 		531
(-3)
P 		1437.3
(3)
P 		906
C 1297.9
(2.2)
P 		525
(-3)
P 		597
(-2.5)
P 		1412.9
(3)
P 		888
avr 1316.9
(3) 		567.9
(-2.6) 		507.7
(-3) 		1220.6
(2.3) 		809

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1718
1 2 3 4 5 6 range
A 1085.6
(-2.4)
P 		921.1
(-3)
P 		1158.3
(-2.2)
P 		1552.5
(-0.7)
P 		2167.7
(1.5)
P 		2598.7
(3)
P 		1678
B 1392.2
(-1.7)
P 		1430.1
(-1.5)
P 		1102.9
(-3)
P 		1458.8
(-1.4)
P 		1881.4
(0.6)
P 		2399.2
(3)
P 		1296
C 1486.5
(-0.5)
P 		1322.4
(-1.2)
P 		881.1
(-3)
P 		1667
(0.2)
P 		2159
(2.3)
P 		2332.8
(3)
P 		1452
avr 1321.4
(-1.8) 		1224.5
(-2.2) 		1047.4
(-3) 		1559.4
(-0.8) 		2069.4
(1.4) 		2443.6
(3) 		1396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 472.6
(3)
P 		88
(-3)
P 		103.3
(-2.8)
P 		118.8
(-2.5)
P 		385
B 432
(3)
P 		190.9
(-1.7)
P 		123
(-3)
P 		306.3
(0.6)
P 		309
C 429.6
(3)
P 		150.9
(-3)
P 		208.1
(-1.8)
P 		238.2
(-1.1)
P 		279
avr 444.7
(3) 		143.3
(-3) 		144.8
(-3) 		221.1
(-1.5) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 695
1 2 3 4 5 6 range
A 200.1
(-3)
P 		327.6
(-1.3)
P 		252.3
(-2.3)
P 		393.8
(-0.4)
P 		654.1
(3)
P 		632.7
(2.7)
P 		454
B 484.4
(-0.9)
P 		476
(-1)
P 		267.8
(-3)
P 		386.4
(-1.9)
P 		764.4
(1.8)
P 		894.6
(3)
P 		627
C 551
(0.5)
P 		403.5
(-1.1)
P 		224.3
(-3)
P 		335.2
(-1.8)
P 		698.6
(2.1)
P 		780.9
(3)
P 		557
avr 411.8
(-1.1) 		402.4
(-1.2) 		248.1
(-3) 		371.8
(-1.6) 		705.7
(2.3) 		769.4
(3) 		521
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194164_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27923
Sequence Type Exemplar sequence
Representative Public ID AV198677 NCBI
Target Description AV198677_rc /REP_DB=TREMBL Accession /GB=AV198677 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk347h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T04H1.2.2 ENSEMBL cdna:known chromosome:CEL140:V:12244558:12247647:-1 gene:T04H1.2 11/11 None
T04H1.2.1 ENSEMBL cdna:known chromosome:CEL140:V:12244558:12247632:-1 gene:T04H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12244669-12244860(-) 60.51 60.51
Public Domain and Genome References
Ensembl T04H1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01578 Hypothetical protein T04H1.2 [Caenorhabditis elegans] ref|NP_506069.1| T04H1.2 [Caenorhabditis elegans] 0.0
blast CAE75426 Hypothetical protein CBG23419 [Caenorhabditis briggsae] 0.0
blast XP_787032 PREDICTED: similar to GTP binding protein 2 [Strongylocentrotus purpuratus] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 9.9E-12
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:194164_S_AT
taggtacccgtgtgtttacattttgctccgggttgataatagttgtacatagttgaaatt
gtacaattctgaatatttgttcactaagtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGTACCCGTGTGTTTACATTTTG 677 625 150 Antisense
GTACCCGTGTGTTTACATTTTGCTC 149 459 153 Antisense
ACCCGTGTGTTTACATTTTGCTCCG 20 91 155 Antisense
CGTGTGTTTACATTTTGCTCCGGGT 288 245 158 Antisense
GTTTACATTTTGCTCCGGGTTGATA 483 447 163 Antisense
TACATTTTGCTCCGGGTTGATAATA 525 643 166 Antisense
ATTTTGCTCCGGGTTGATAATAGTT 606 13 169 Antisense
GCTCCGGGTTGATAATAGTTGTACA 23 283 174 Antisense
GATAATAGTTGTACATAGTTGAAAT 255 423 184 Antisense
GAAATTGTACAATTCTGAATATTTG 18 365 204 Antisense
TTCTGAATATTTGTTCACTAAGTGA 403 671 216 Antisense
Sequence Source Affymetrix Proprietary Database