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[194163_s_at]

Description AV178482_rc /REP_DB=TREMBL Accession /GB=AV178482 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566h11 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 42
(-3)
A 		110.5
(-1.5)
P 		176
(-0.1)
P 		315
(3)
P 		273
B 61.6
(-3)
A 		107.5
(-2.2)
A 		196.8
(-0.5)
P 		389.7
(3)
P 		328
C 43.7
(-3)
A 		161.4
(-0.9)
P 		171.2
(-0.7)
A 		382.5
(3)
P 		339
avr 49.1
(-3) 		126.5
(-1.5) 		181.3
(-0.5) 		362.4
(3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9974
1 2 3 4 5 6 range
A 28.8
(-3)
A 		48.5
(-3)
A 		297.3
(-2.8)
P 		634.6
(-2.6)
P 		5172.7
(0.1)
P 		9985.1
(3)
P 		9956
B 24
(-3)
A 		75.5
(-3)
A 		367.4
(-2.8)
P 		858.3
(-2.4)
P 		5029.5
(0.5)
P 		8588.2
(3)
P 		8564
C 11.2
(-3)
A 		84.3
(-2.9)
A 		364.8
(-2.7)
P 		679.4
(-2.5)
P 		5065.8
(0.6)
P 		8361.5
(3)
P 		8350
avr 21.3
(-3) 		69.4
(-3) 		343.2
(-2.8) 		724.1
(-2.5) 		5089.3
(0.4) 		8978.3
(3) 		8957
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 15.3
(-3)
A 		24
(-1.3)
P 		46
(3)
P 		46.1
(3)
P 		31
B 19.6
(-3)
A 		26.6
(-2.3)
A 		45.6
(-0.5)
P 		83
(3)
P 		63
C 14.5
(-3)
A 		46.4
(0.8)
P 		59.7
(2.4)
A 		64.5
(3)
P 		50
avr 16.5
(-3) 		32.3
(-1) 		50.4
(1.2) 		64.5
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3198
1 2 3 4 5 6 range
A 5.3
(-3)
A 		17.3
(-3)
A 		64.7
(-2.9)
P 		160.9
(-2.6)
P 		1560.9
(0.8)
P 		2431.1
(3)
P 		2426
B 8.4
(-3)
A 		25.1
(-3)
A 		89.2
(-2.8)
P 		227.3
(-2.6)
P 		2043.4
(0.8)
P 		3202.5
(3)
P 		3194
C 4.1
(-3)
A 		25.7
(-3)
A 		92.9
(-2.8)
P 		136.6
(-2.7)
P 		1639.2
(0.5)
P 		2799.1
(3)
P 		2795
avr 5.9
(-3) 		22.7
(-3) 		82.3
(-2.8) 		174.9
(-2.6) 		1747.8
(0.7) 		2810.9
(3) 		2805
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194163_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27667
Sequence Type Exemplar sequence
Representative Public ID AV178482 NCBI
Target Description AV178482_rc /REP_DB=TREMBL Accession /GB=AV178482 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066150 NCBI Caenorhabditis elegans B0280.5 (B0280.5) mRNA, complete cds. 11/11 A 
SNAP00000041604 ENSEMBL cdna:SNAP chromosome:CEL140:III:7102160:7103910:-1 11/11 None
GENEFINDER00000041619 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7102160:7106384:-1 11/11 None
B0280.5 ENSEMBL cdna:known chromosome:CEL140:III:7102016:7103914:-1 gene:B0280.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7102080-7102362(-) 89.74 89.74
Public Domain and Genome References
Gene Title
Ensembl B0280.5
Entrez Gene 175991 Entrez gene
SwissProt P41996 EMBL-EBI
WormBase CE31868 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19083 Hypothetical protein B0280.5 [Caenorhabditis elegans] ref|NP_498551.3| B0280.5 [Caenorhabditis elegans] sp|P41996|B028_CAEEL Cytokinesis B0280.5 protein precursor 0.0
blast T15299 hypothetical protein B0280.5 - Caenorhabditis elegans 0.0
blast CAE72761 Hypothetical protein CBG20011 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.5E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 9.9E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 8.0E-23
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.1E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.8E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 6.1E-11
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.5E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 9.9E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 8.0E-23
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.1E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.8E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 6.1E-11
Sequence
Target Sequence 
>C. ELEGANS:194163_S_AT
tcattgatgagactccaattgctgcattngactgttccactgacggctnttttccgatgg
cntttgttntgccacttatcatcagtgcactgccggacaactcattaacttcacttgtgc
cgcgag

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTGATGAGACTCCAATTGCTGC 463 617 45 Antisense
TTGATGAGACTCCAATTGCTGCATT 266 705 48 Antisense
TGCCACTTATCATCAGTGCACTGCC 151 587 114 Antisense
CCACTTATCATCAGTGCACTGCCGG 399 273 116 Antisense
CTTATCATCAGTGCACTGCCGGACA 521 221 119 Antisense
ATCATCAGTGCACTGCCGGACAACT 37 31 122 Antisense
ACTGCCGGACAACTCATTAACTTCA 171 99 133 Antisense
TGCCGGACAACTCATTAACTTCACT 83 585 135 Antisense
CCGGACAACTCATTAACTTCACTTG 504 263 137 Antisense
AACTCATTAACTTCACTTGTGCCGC 264 141 143 Antisense
TCATTAACTTCACTTGTGCCGCGAG 659 619 146 Antisense
Sequence Source Affymetrix Proprietary Database