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[194161_s_at]

Description AV182584_rc /REP_DB=TREMBL Accession /GB=AV182584 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 02      6grp_total > 28      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5280
1 2 3 4 range
A 3979.6
(1.4)
P 		1027.6
(-3)
P 		1527.6
(-2.3)
P 		5041.2
(3)
P 		4014
B 3811.6
(0.1)
P 		1941.7
(-2.7)
P 		1720.5
(-3)
P 		5785.9
(3)
P 		4065
C 3672.7
(-0.5)
P 		1940.8
(-2.7)
P 		1732.8
(-3)
P 		6307.7
(3)
P 		4575
avr 3821.3
(0.2) 		1636.7
(-3) 		1660.3
(-3) 		5711.6
(3) 		4075

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3942
1 2 3 4 5 6 range
A 3464.6
(3)
P 		2314
(-0.2)
P 		1650
(-2.1)
P 		1312.8
(-3)
P 		2036.4
(-1)
P 		2466.3
(0.2)
P 		2152
B 4384
(3)
P 		2605.1
(-0.1)
P 		951.9
(-3)
P 		1584
(-1.9)
P 		1794.2
(-1.5)
P 		2237.4
(-0.8)
P 		3432
C 3698.4
(3)
P 		2668
(1.1)
P 		1432.9
(-1.2)
P 		442.1
(-3)
P 		2079.2
(0)
P 		1960.6
(-0.2)
P 		3256
avr 3849
(3) 		2529
(0.1) 		1344.9
(-2.5) 		1113
(-3) 		1969.9
(-1.1) 		2221.4
(-0.6) 		2736
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1226
1 2 3 4 range
A 1449
(3)
P 		223.1
(-3)
P 		399.3
(-2.1)
P 		737.9
(-0.5)
P 		1226
B 1215.5
(2.9)
P 		479.5
(-2.4)
P 		398.7
(-3)
P 		1233
(3)
P 		834
C 1215.8
(3)
P 		558
(-3)
P 		603.9
(-2.6)
P 		1063.6
(1.6)
P 		658
avr 1293.4
(3) 		420.2
(-3) 		467.3
(-2.7) 		1011.5
(1.1) 		873

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1437
1 2 3 4 5 6 range
A 638.7
(0.7)
P 		823
(3)
P 		359.3
(-2.7)
P 		332.9
(-3)
P 		614.5
(0.4)
P 		600.5
(0.3)
P 		490
B 1525.4
(3)
P 		867.1
(-0.1)
P 		231.1
(-3)
P 		419.5
(-2.1)
P 		729
(-0.7)
P 		834.3
(-0.2)
P 		1294
C 1370.8
(3)
P 		814.1
(0.4)
P 		364.7
(-1.7)
P 		88.9
(-3)
P 		672.8
(-0.3)
P 		656.3
(-0.3)
P 		1282
avr 1178.3
(3) 		834.7
(0.7) 		318.4
(-2.7) 		280.4
(-3) 		672.1
(-0.4) 		697
(-0.2) 		898
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194161_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28010
Sequence Type Exemplar sequence
Representative Public ID AV182584 NCBI
Target Description AV182584_rc /REP_DB=TREMBL Accession /GB=AV182584 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028244(11), NM_001028241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028244 NCBI Caenorhabditis elegans W02C12.3g (W02C12.3) mRNA, complete cds. 11/11 None
NM_001028241 NCBI Caenorhabditis elegans W02C12.3d (W02C12.3) mRNA, complete cds. 11/11 None
W02C12.3g ENSEMBL cdna:known chromosome:CEL140:IV:4014772:4019036:-1 gene:W02C12.3 11/11 A 
W02C12.3d.1 ENSEMBL cdna:known chromosome:CEL140:IV:4014793:4028121:-1 gene:W02C12.3 11/11 A 
W02C12.3d.2 ENSEMBL cdna:known chromosome:CEL140:IV:4014793:4027057:-1 gene:W02C12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177157 8 2 NM_001028241 174862_at (11), 194161_s_at (11)
NM_001028244 174862_at (11), 194161_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4014867-4015156(-) 95.65 95.65
Public Domain and Genome References
Ensembl W02C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91678 Hypothetical protein W02C12.3g [Caenorhabditis elegans] ref|NP_001023415.1| W02C12.3g [Caenorhabditis elegans] 0.0
blast AAB37997 Hypothetical protein W02C12.3a [Caenorhabditis elegans] ref|NP_500462.1| W02C12.3a [Caenorhabditis elegans] 0.0
blast AAO91674 Hypothetical protein W02C12.3c [Caenorhabditis elegans] ref|NP_001023411.1| W02C12.3c [Caenorhabditis elegans] 0.0
blast AAO91675 Hypothetical protein W02C12.3d [Caenorhabditis elegans] ref|NP_001023412.1| W02C12.3d [Caenorhabditis elegans] 0.0
blast AAO91676 Hypothetical protein W02C12.3e [Caenorhabditis elegans] ref|NP_001023413.1| W02C12.3e [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Sequence
Target Sequence 
>C. ELEGANS:194161_S_AT
acaaaacaatgtgtgtcggcgggtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnatgttccctgtttctaggnnnnnctctgattcgattcgactccccaca
accttttgcaacaactgnnnnntttcactttaatttactctctccagattntttggtttt
ccgatcctctcctccagacacccataggcgcttatatatatttgattcgacaaccaattc
tgtaatttatgta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAACAATGTGTGTCGGCGGGTA 507 109 27 Antisense
TTTCACTTTAATTTACTCTCTCCAG 414 673 169 Antisense
TTCACTTTAATTTACTCTCTCCAGA 310 687 170 Antisense
CACTTTAATTTACTCTCTCCAGATT 523 197 172 Antisense
CAGACACCCATAGGCGCTTATATAT 366 205 221 Antisense
GACACCCATAGGCGCTTATATATAT 634 365 223 Antisense
ACCCATAGGCGCTTATATATATTTG 350 91 226 Antisense
TAGGCGCTTATATATATTTGATTCG 431 653 231 Antisense
ATTTGATTCGACAACCAATTCTGTA 655 15 246 Antisense
GATTCGACAACCAATTCTGTAATTT 109 433 250 Antisense
GACAACCAATTCTGTAATTTATGTA 562 365 255 Antisense
Sequence Source Affymetrix Proprietary Database