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[194160_s_at]

Description R05G9.D /REP_DB=WormBase Gene ID /WP=CE25969 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 0      4grp_high_8_8 > 37      6grp_highest_nonorm > 47      6grp_total > 92      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2394
1 2 3 4 range
A 3126.6
(-3)
P 		5520.9
(3)
P 		3814
(-1.3)
P 		3873.9
(-1.1)
P 		2394
B 3445.4
(-3)
P 		4632.7
(3)
P 		3985.7
(-0.3)
P 		3590.8
(-2.3)
P 		1187
C 3459
(-3)
P 		4626.4
(3)
P 		3593.6
(-2.3)
P 		3623.8
(-2.2)
P 		1167
avr 3343.7
(-3) 		4926.7
(3) 		3797.8
(-1.3) 		3696.2
(-1.7) 		1583

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2220
1 2 3 4 5 6 range
A 3290
(-0.5)
P 		3973.5
(3)
P 		2812.7
(-3)
P 		3602.5
(1.1)
P 		3507
(0.6)
P 		2844.8
(-2.8)
P 		1161
B 3799.6
(1.1)
P 		3283.7
(-0.6)
P 		3478.1
(0)
P 		3446.3
(-0.1)
P 		4392.9
(3)
P 		2550.8
(-3)
P 		1842
C 4639.3
(3)
P 		3386.7
(-0.4)
P 		3096.2
(-1.2)
P 		3234.2
(-0.8)
P 		4113.3
(1.6)
P 		2419
(-3)
P 		2220
avr 3909.6
(2.6) 		3548
(1) 		3129
(-0.8) 		3427.7
(0.5) 		4004.4
(3) 		2604.9
(-3) 		1400
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 763
1 2 3 4 range
A 1138.4
(2.4)
P 		1198.4
(3)
P 		997.1
(1.1)
P 		567.1
(-3)
P 		631
B 1098.7
(2.3)
P 		1144.2
(3)
P 		923.6
(-0.5)
P 		765.2
(-3)
P 		379
C 1145
(1.5)
P 		1330.1
(3)
P 		1252.5
(2.4)
P 		611
(-3)
P 		719
avr 1127.4
(2) 		1224.2
(3) 		1057.7
(1.3) 		647.8
(-3) 		576

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1178
1 2 3 4 5 6 range
A 606.5
(-3)
P 		1413.2
(3)
P 		612.6
(-3)
P 		913.7
(-0.7)
P 		1058.3
(0.4)
P 		692.6
(-2.4)
P 		807
B 1322.1
(0)
P 		1093
(-1.4)
P 		844.6
(-3)
P 		912.8
(-2.6)
P 		1784.8
(3)
P 		951.2
(-2.3)
P 		940
C 1719.6
(3)
P 		1033.4
(-0.9)
P 		788
(-2.2)
P 		650.4
(-3)
P 		1331
(0.8)
P 		809.8
(-2.1)
P 		1069
avr 1216.1
(1.4) 		1179.9
(1) 		748.4
(-3) 		825.6
(-2.3) 		1391.4
(3) 		817.9
(-2.4) 		643
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194160_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18879
Sequence Type Exemplar sequence
Representative Public ID R05G9.D NCBI
Target Description R05G9.D /REP_DB=WormBase Gene ID /WP=CE25969 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062911 NCBI Caenorhabditis elegans T28D9.1 (T28D9.1) mRNA, complete cds. 11/11 A 
T28D9.1.2 ENSEMBL cdna:known chromosome:CEL140:II:6492347:6493719:1 gene:T28D9.1 11/11 None
T28D9.1.1 ENSEMBL cdna:known chromosome:CEL140:II:6492349:6493719:1 gene:T28D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6493061-6493382(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28D9.1
Entrez Gene 174074 Entrez gene
SwissProt Q10020 EMBL-EBI
WormBase CE28092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68316 Hypothetical protein T28D9.1 [Caenorhabditis elegans] ref|NP_495312.1| T28D9.1 [Caenorhabditis elegans] sp|Q10020|YSX1_CAEEL Hypothetical protein T28D9.1 in chromosome II 3.0E-15
blast T16955 hypothetical protein T28D9.1 - Caenorhabditis elegans 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:194160_S_AT
ctccagtcgccgacgcagaggaggatgctccattgaccaagaaaagcaaggttgaggatg
aggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAGTCGCCGACGCAGAGGAGGA 35 237 19 Antisense
CCAGTCGCCGACGCAGAGGAGGATG 484 271 21 Antisense
GTCGCCGACGCAGAGGAGGATGCTC 231 475 24 Antisense
CGCCGACGCAGAGGAGGATGCTCCA 658 255 26 Antisense
GACGCAGAGGAGGATGCTCCATTGA 398 379 30 Antisense
GCAGAGGAGGATGCTCCATTGACCA 147 311 33 Antisense
AGGAGGATGCTCCATTGACCAAGAA 283 57 37 Antisense
GAGGATGCTCCATTGACCAAGAAAA 382 403 39 Antisense
GGATGCTCCATTGACCAAGAAAAGC 512 513 41 Antisense
GCTCCATTGACCAAGAAAAGCAAGG 212 299 45 Antisense
AGAAAAGCAAGGTTGAGGATGAGGT 76 73 58 Antisense
Sequence Source Affymetrix Proprietary Database