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[194159_s_at]

Description Y71G12A.A /REP_DB=WormBase Gene ID /WP=CE26248 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 27      6grp_total > 62      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7288
1 2 3 4 range
A 4746.1
(1.2)
P 		6516.5
(2.8)
P 		6699.1
(3)
P 		113
(-3)
P 		6586
B 5026.6
(1.1)
P 		6021.1
(1.9)
P 		7390.8
(3)
P 		103.3
(-3)
P 		7288
C 4663.5
(1.6)
P 		5573.5
(2.5)
P 		6054.1
(3)
P 		153.7
(-3)
P 		5900
avr 4812.1
(1.3) 		6037
(2.4) 		6714.7
(3) 		123.3
(-3) 		6591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13637
1 2 3 4 5 6 range
A 3253.9
(-3)
P 		8831.9
(-0.3)
P 		13234.7
(1.9)
P 		15599.5
(3)
P 		7999.5
(-0.7)
P 		4511.3
(-2.4)
P 		12346
B 3062.1
(-3)
P 		5426.2
(-1.4)
P 		11993.9
(3)
P 		9500.2
(1.3)
P 		8887.5
(0.9)
P 		3579.2
(-2.7)
P 		8932
C 3560.1
(-3)
P 		6023
(-1.9)
P 		16699.3
(3)
P 		10241.2
(0.1)
P 		12672.4
(1.2)
P 		4041
(-2.8)
P 		13139
avr 3292
(-3) 		6760.4
(-1.1) 		13976
(3) 		11780.3
(1.8) 		9853.1
(0.7) 		4043.8
(-2.6) 		10684
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2094
1 2 3 4 range
A 1728.1
(2.9)
P 		1414.6
(1.8)
P 		1751.3
(3)
P 		16.5
(-3)
P 		1735
B 1602.9
(2.6)
P 		1487.1
(2.2)
P 		1712.6
(3)
P 		22
(-3)
P 		1691
C 1543.7
(1.4)
P 		1602.4
(1.5)
P 		2110.1
(3)
P 		25.9
(-3)
P 		2084
avr 1624.9
(2.2) 		1501.4
(1.8) 		1858
(3) 		21.5
(-3) 		1837

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3651
1 2 3 4 5 6 range
A 599.8
(-3)
P 		3141.1
(1.5)
P 		2882.2
(1.1)
P 		3956.4
(3)
P 		2413.9
(0.2)
P 		1098.4
(-2.1)
P 		3357
B 1065.5
(-3)
P 		1806.1
(-1.3)
P 		2912.5
(1.4)
P 		2516.3
(0.4)
P 		3610.9
(3)
P 		1334.7
(-2.4)
P 		2545
C 1319.6
(-3)
P 		1837.8
(-1.9)
P 		4250.3
(3)
P 		2059.5
(-1.5)
P 		4100.6
(2.7)
P 		1352.8
(-2.9)
P 		2931
avr 995
(-3) 		2261.7
(0.2) 		3348.3
(2.9) 		2844.1
(1.7) 		3375.1
(3) 		1262
(-2.3) 		2380
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194159_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18700
Sequence Type Exemplar sequence
Representative Public ID Y71G12A.A NCBI
Target Description Y71G12A.A /REP_DB=WormBase Gene ID /WP=CE26248 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170807 NCBI Caenorhabditis elegans Y51F10.7 (Y51F10.7) mRNA, complete cds. 11/11 None
Y51F10.7 ENSEMBL cdna:known chromosome:CEL140:I:1911691:1913937:-1 gene:Y51F10.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1911846-1911921(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51F10.7
Entrez Gene 171761 Entrez gene
SwissProt Q8TA47 EMBL-EBI
WormBase CE30321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740790 Y51F10.7 [Caenorhabditis elegans] gb|AAL77192.1| Hypothetical protein Y51F10.7 [Caenorhabditis elegans] 1.0E-109
blast CAE74397 Hypothetical protein CBG22129 [Caenorhabditis briggsae] 2.0E-85
blast AAK31439 Hypothetical protein C17F4.7 [Caenorhabditis elegans] ref|NP_494487.1| C17F4.7 [Caenorhabditis elegans] 5.0E-84
Sequence
Target Sequence 
>C. ELEGANS:194159_S_AT
atgttcaactacaacgccggtgacacaaagcacgaggagatcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCAACTACAACGCCGGTGACA 404 47 13 Antisense
TGTTCAACTACAACGCCGGTGACAC 245 561 14 Antisense
TTCAACTACAACGCCGGTGACACAA 281 685 16 Antisense
TCAACTACAACGCCGGTGACACAAA 329 629 17 Antisense
AACTACAACGCCGGTGACACAAAGC 209 139 19 Antisense
CTACAACGCCGGTGACACAAAGCAC 386 227 21 Antisense
ACAACGCCGGTGACACAAAGCACGA 421 113 23 Antisense
AACGCCGGTGACACAAAGCACGAGG 506 145 25 Antisense
ACGCCGGTGACACAAAGCACGAGGA 271 91 26 Antisense
GCCGGTGACACAAAGCACGAGGAGA 548 283 28 Antisense
TGACACAAAGCACGAGGAGATCGCG 269 571 33 Antisense
Sequence Source Affymetrix Proprietary Database