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[194158_s_at]

Description Y105E8B.A /REP_DB=WormBase Gene ID /WP=CE26390 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60844.1
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 61      6grp_total > 24      4grp_total > 57      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 375.7
(-1)
P 		478.9
(3)
P 		476.5
(2.9)
P 		325.8
(-3)
P 		153
B 356.4
(-2.4)
P 		621.7
(3)
P 		582
(2.2)
P 		329.4
(-3)
P 		292
C 477.3
(-0.6)
P 		447.8
(-1.2)
P 		653.6
(3)
P 		357.6
(-3)
P 		296
avr 403.1
(-1.3) 		516.1
(1.6) 		570.7
(3) 		337.6
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 446.7
(2.2)
P 		472.3
(3)
P 		471
(3)
P 		304.3
(-2.1)
P 		273.2
(-3)
P 		311.9
(-1.8)
P 		199
B 530.6
(1.8)
P 		480.6
(-0.2)
P 		563
(3)
P 		407.2
(-3)
P 		447.2
(-1.5)
P 		426
(-2.3)
P 		156
C 597.3
(3)
P 		381.8
(-2)
P 		365.7
(-2.4)
P 		478.6
(0.2)
P 		339.1
(-3)
P 		372.5
(-2.2)
P 		258
avr 524.9
(3) 		444.9
(0.2) 		466.6
(1) 		396.7
(-1.5) 		353.2
(-3) 		370.1
(-2.4) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 136.8
(3)
P 		103.9
(0.8)
P 		124.6
(2.2)
P 		47.7
(-3)
P 		89
B 113.7
(0.1)
P 		153.5
(3)
P 		134.9
(1.7)
P 		70.2
(-3)
P 		83
C 158
(0.5)
P 		128.8
(-0.5)
P 		227.8
(3)
P 		60.3
(-3)
P 		168
avr 136.2
(1.5) 		128.7
(1) 		162.4
(3) 		59.4
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 82.3
(-2.6)
P 		168
(3)
P 		102.6
(-1.3)
P 		77.2
(-2.9)
P 		82.5
(-2.6)
P 		75.9
(-3)
P 		92
B 184.6
(3)
P 		160
(1.1)
P 		136.7
(-0.7)
P 		107.8
(-3)
P 		181.7
(2.8)
P 		158.8
(1)
P 		77
C 221.4
(3)
P 		116.5
(-1.9)
P 		93.1
(-3)
P 		96.2
(-2.9)
P 		109.7
(-2.2)
P 		124.7
(-1.5)
P 		128
avr 162.8
(3) 		148.2
(1.7) 		110.8
(-1.5) 		93.7
(-3) 		124.6
(-0.3) 		119.8
(-0.7) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194158_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18819
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.A NCBI
Target Description Y105E8B.A /REP_DB=WormBase Gene ID /WP=CE26390 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON) protein_id:CAB60844.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170935 NCBI Caenorhabditis elegans Y105E8A.3 (Y105E8A.3) mRNA, complete cds. 11/11 A 
SNAP00000013320 ENSEMBL cdna:SNAP chromosome:CEL140:I:14355765:14375522:1 11/11 None
GENEFINDER00000013487 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14366779:14375522:1 11/11 None
Y105E8A.3 ENSEMBL cdna:known chromosome:CEL140:I:14366654:14375699:1 gene:Y105E8A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14375360-14375453(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.3
Entrez Gene 173299 Entrez gene
SwissProt Q8WQB6 EMBL-EBI
WormBase CE32233 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12368.1.S1_S_AT similar to zinc transporter ZTL1 isoform 1 cfa
CHICKEN:GGA.8469.1.S1_AT solute carrier family 30 (zinc transporter), member 5 gga
CHICKEN:GGAAFFX.11883.1.S1_AT solute carrier family 30 (zinc transporter), member 5 gga
HG-U133_PLUS_2:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A_2:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HU35KSUBA:RC_AA598723_AT solute carrier family 30 (zinc transporter), member 5 hs
HU35KSUBB:RC_R77771_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A_2:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:G13443011_3P_X_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:G13443011_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS2AFFX.1.207.S1_3P_S_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS2AFFX.1.207.S1_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS.165490.0.A1_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS.129445.2.S1_3P_A_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:1555334_3P_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:1555334_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:232432_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133B:232432_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:243166_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133B:243166_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95B:59029_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:65193_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:66873_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95D:91769_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:58138_AT Solute carrier family 30 (zinc transporter), member 5 hs
RG-U34C:RC_AI146110_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
RAE230A:1373821_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
RAT230_2:1373821_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD21657 Hypothetical protein Y105E8A.3 [Caenorhabditis elegans] ref|NP_740931.2| Y105E8A.3 [Caenorhabditis elegans] 0.0
blast CAE64126 Hypothetical protein CBG08742 [Caenorhabditis briggsae] 0.0
blast NP_001015911 solute carrier family 30 (zinc transporter), member 5 [Xenopus tropicalis] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 1.1E-85
Pfam IPR002524 EMBL-EBI Cation efflux protein 1.1E-85
Pfam IPR002524 EMBL-EBI Cation efflux protein 9.4E-74
Pfam IPR002524 EMBL-EBI Cation efflux protein 1.6E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740931.2 16 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611
Y105E8A.3 16 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611
SNAP00000013320 16 13-35,39-58,71-93,103-121,134-148,175-197,218-240,250-272,285-307,317-334,392-414,424-446,459-481,496-513,550-572,577-599
GENEFINDER00000013487 17 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611,764-786
Sequence
Target Sequence 
>C. ELEGANS:194158_S_AT
gtagtccgcggaagtgtgataagagagaagaagcatgatcattcacatcaccacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTCCGCGGAAGTGTGATAAGAG 231 457 13 Antisense
TAGTCCGCGGAAGTGTGATAAGAGA 365 653 14 Antisense
GAGAGAAGAAGCATGATCATTCACA 122 395 35 Antisense
GAGAAGAAGCATGATCATTCACATC 577 391 37 Antisense
AGAAGAAGCATGATCATTCACATCA 6 75 38 Antisense
GAAGAAGCATGATCATTCACATCAC 652 339 39 Antisense
AAGAAGCATGATCATTCACATCACC 226 153 40 Antisense
AGAAGCATGATCATTCACATCACCA 108 75 41 Antisense
GAAGCATGATCATTCACATCACCAC 569 341 42 Antisense
AAGCATGATCATTCACATCACCACG 57 151 43 Antisense
AGCATGATCATTCACATCACCACGG 670 77 44 Antisense
Sequence Source Affymetrix Proprietary Database