[Home] | [Total List]

[194157_s_at]

Description F53B6.8 /REP_DB=WormBase Gene ID /WP=CE23765 /TR=Q9U3E7 /GB=CAB54255.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      6grp_total > 68      4grp_total > 02      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1092
1 2 3 4 range
A 107
(-2.9)
P 		88.1
(-3)
A 		97.5
(-2.9)
A 		1168.7
(3)
P 		1081
B 115.7
(-2.8)
P 		77
(-3)
P 		97
(-2.9)
M 		1079.4
(3)
P 		1002
C 97
(-2.9)
P 		79.4
(-3)
M 		92.8
(-2.9)
M 		1098
(3)
P 		1019
avr 106.6
(-2.9) 		81.5
(-3) 		95.8
(-2.9) 		1115.4
(3) 		1034

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 196.4
(-1.5)
P 		85.6
(-3)
P 		180.5
(-1.7)
P 		134.2
(-2.3)
P 		177.3
(-1.8)
P 		528.1
(3)
P 		443
B 185.4
(-2)
P 		122.5
(-3)
P 		168
(-2.3)
P 		145.7
(-2.6)
P 		163.5
(-2.4)
P 		504.5
(3)
P 		382
C 286.8
(-0.5)
P 		66
(-3)
M 		112.3
(-2.5)
P 		102
(-2.6)
A 		165.6
(-1.9)
P 		595
(3)
P 		529
avr 222.9
(-1.3) 		91.4
(-3) 		153.6
(-2.2) 		127.3
(-2.5) 		168.8
(-2) 		542.5
(3) 		451
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 38.9
(-2.2)
P 		19.1
(-3)
A 		25.5
(-2.7)
A 		171.1
(3)
P 		152
B 36.9
(-2.5)
P 		19
(-3)
P 		22.5
(-2.9)
M 		230
(3)
P 		211
C 32.1
(-2.7)
P 		22.8
(-3)
M 		32.3
(-2.6)
M 		185.1
(3)
P 		162
avr 36
(-2.5) 		20.3
(-3) 		26.8
(-2.8) 		195.4
(3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 36.2
(-2.6)
P 		30.4
(-3)
P 		39.3
(-2.5)
P 		34
(-2.8)
P 		53.5
(-1.6)
P 		128.6
(3)
P 		98
B 64.5
(-2)
P 		40.8
(-2.9)
P 		40.8
(-2.9)
P 		38.6
(-3)
P 		66.4
(-1.9)
P 		188.1
(3)
P 		150
C 106.3
(-0.1)
P 		20.1
(-3)
M 		28.6
(-2.7)
P 		20.5
(-3)
A 		53.6
(-1.9)
P 		199.2
(3)
P 		179
avr 69
(-1.4) 		30.4
(-3) 		36.2
(-2.8) 		31
(-3) 		57.8
(-1.8) 		172
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194157_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1576
Sequence Type Exemplar sequence
Representative Public ID F53B6.8 NCBI
Target Description F53B6.8 /REP_DB=WormBase Gene ID /WP=CE23765 /TR=Q9U3E7 /GB=CAB54255.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060005 NCBI Caenorhabditis elegans F53B6.8 (F53B6.8) mRNA, complete cds. 11/11 None
GENEFINDER00000012072 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8948624:8955300:-1 10/11 None
SNAP00000012066 ENSEMBL cdna:SNAP chromosome:CEL140:I:8954909:8955300:-1 11/11 None
F53B6.8 ENSEMBL cdna:known chromosome:CEL140:I:8954832:8955300:-1 gene:F53B6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8954839-8955231(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B6.8
Entrez Gene 172708 Entrez gene
SwissProt Q9U3E7 EMBL-EBI
WormBase CE23765 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03121 Hypothetical protein F53B6.2a [Caenorhabditis elegans] ref|NP_492405.3| F53B6.2a [Caenorhabditis elegans] 1.0E-116
blast CAE66996 Hypothetical protein CBG12394 [Caenorhabditis briggsae] 1.0E-112
blast AAF57229 CG31619-PA, isoform A [Drosophila melanogaster] ref|NP_724359.1| CG31619-PA, isoform A [Drosophila melanogaster] 2.0E-18
blast CAB54255 Hypothetical protein F53B6.8 [Caenorhabditis elegans] ref|NP_492406.1| F53B6.8 [Caenorhabditis elegans] 7.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492406.1 1 5-27
F53B6.8 1 5-27
GENEFINDER00000012072 3 4-26,33-55,65-87
SNAP00000012066 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:194157_S_AT
atcctattggtatttttgatggccgttgctggtacatttgctggtatttctgtgtcgttc
tctcattctcatgaattcccccgtcacggactgttaggtggaggtggattcaatccatat
ggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTATTGGTATTTTTGATGGCCG 12 39 25 Antisense
TGGTATTTTTGATGGCCGTTGCTGG 480 551 32 Antisense
CATTTGCTGGTATTTCTGTGTCGTT 306 215 59 Antisense
TTTGCTGGTATTTCTGTGTCGTTCT 30 669 61 Antisense
GTCGTTCTCTCATTCTCATGAATTC 470 473 78 Antisense
CGTTCTCTCATTCTCATGAATTCCC 58 249 80 Antisense
CCCCGTCACGGACTGTTAGGTGGAG 555 261 103 Antisense
GTCACGGACTGTTAGGTGGAGGTGG 365 461 107 Antisense
GGACTGTTAGGTGGAGGTGGATTCA 259 523 112 Antisense
TTAGGTGGAGGTGGATTCAATCCAT 159 681 118 Antisense
GAGGTGGATTCAATCCATATGGTGG 440 401 125 Antisense
Sequence Source Affymetrix Proprietary Database