[Home] | [Total List]

[194156_s_at]

Description Y48A6B.4 /REP_DB=WormBase Gene ID /WP=CE19187 /TR=Q9XXD3 /GB=CAA19528.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 28.4
(-2.5)
A 		65.1
(3)
M 		25.3
(-3)
A 		32.6
(-1.9)
A 		40
B 25
(-3)
A 		40.7
(2.4)
A 		31.7
(-0.7)
A 		42.6
(3)
A 		18
C 36.8
(0.2)
A 		40.2
(2)
A 		30.3
(-3)
A 		42.3
(3)
A 		12
avr 30.1
(-2.7) 		48.7
(3) 		29.1
(-3) 		39.2
(0.1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 82.5
(3)
P 		19.1
(-3)
A 		23.1
(-2.6)
A 		34.3
(-1.6)
A 		35.3
(-1.5)
P 		24.2
(-2.5)
A 		63
B 41.6
(3)
A 		32.1
(-0.2)
M 		31.2
(-0.5)
A 		23.7
(-3)
A 		26.4
(-2.1)
A 		29.2
(-1.2)
A 		18
C 25.6
(-1.6)
A 		37
(-0)
A 		16.1
(-3)
A 		58.2
(3)
A 		19.4
(-2.5)
A 		31.8
(-0.8)
A 		42
avr 49.9
(3) 		29.4
(-1.7) 		23.5
(-3) 		38.7
(0.5) 		27
(-2.2) 		28.4
(-1.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.4
(0.6)
A 		14.1
(3)
M 		6.6
(-1.8)
A 		4.8
(-3)
A 		9
B 8
(-1.5)
A 		10.1
(3)
A 		7.3
(-3)
A 		9.1
(0.9)
A 		3
C 12.2
(3)
A 		11.6
(2.3)
A 		10.6
(1.1)
A 		7.1
(-3)
A 		5
avr 10.2
(0.9) 		11.9
(3) 		8.2
(-1.5) 		7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 15.2
(3)
P 		6.8
(-1.9)
A 		5
(-3)
A 		8.7
(-0.8)
A 		10.7
(0.4)
P 		5.9
(-2.5)
A 		10
B 14.5
(3)
A 		10.7
(0.2)
M 		7.6
(-2)
A 		6.3
(-3)
A 		10.7
(0.2)
A 		10.9
(0.4)
A 		8
C 9.5
(1.3)
A 		11.3
(2.7)
A 		4.1
(-3)
A 		11.7
(3)
A 		6.3
(-1.3)
A 		10.7
(2.2)
A 		8
avr 13.1
(3) 		9.6
(0.2) 		5.6
(-3) 		8.9
(-0.4) 		9.2
(-0.1) 		9.2
(-0.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194156_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7121
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.4 NCBI
Target Description Y48A6B.4 /REP_DB=WormBase Gene ID /WP=CE19187 /TR=Q9XXD3 /GB=CAA19528.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067013 NCBI Caenorhabditis elegans Y48A6B.4 (Y48A6B.4) mRNA, complete cds. 11/11 None
Y48A6B.4.3 ENSEMBL cdna:known chromosome:CEL140:III:11007054:11007479:-1 gene:Y48A6B.4 11/11 None
Y48A6B.4.1 ENSEMBL cdna:known chromosome:CEL140:III:11007111:11007479:-1 gene:Y48A6B.4 11/11 None
Y48A6B.4.2 ENSEMBL cdna:known chromosome:CEL140:III:11007112:11007479:-1 gene:Y48A6B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033004 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11007331-11007475(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48A6B.4
Entrez Gene 176530 Entrez gene
SwissProt Q9XXD3 EMBL-EBI
WormBase CE19187 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19528 Hypothetical protein Y48A6B.4 [Caenorhabditis elegans] ref|NP_499414.1| Y48A6B.4 [Caenorhabditis elegans] 3.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499414.1 1 2-24
Y48A6B.4.3 1 2-24
Y48A6B.4.1 1 2-24
Y48A6B.4.2 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:194156_S_AT
gtcttcgccatcttggctatttcttcagtttctggaatcttcttgccacaaggaggaaag
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTCGCCATCTTGGCTATTTCTT 54 469 34 Antisense
CTTCGCCATCTTGGCTATTTCTTCA 643 219 36 Antisense
TCGCCATCTTGGCTATTTCTTCAGT 199 599 38 Antisense
CCATCTTGGCTATTTCTTCAGTTTC 435 271 41 Antisense
ATCTTGGCTATTTCTTCAGTTTCTG 141 31 43 Antisense
CTTGGCTATTTCTTCAGTTTCTGGA 649 217 45 Antisense
GTTTCTGGAATCTTCTTGCCACAAG 293 451 61 Antisense
TTCTGGAATCTTCTTGCCACAAGGA 355 695 63 Antisense
CTGGAATCTTCTTGCCACAAGGAGG 585 241 65 Antisense
GGAATCTTCTTGCCACAAGGAGGAA 132 533 67 Antisense
ATCTTCTTGCCACAAGGAGGAAAGA 483 29 70 Antisense
Sequence Source Affymetrix Proprietary Database