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[194155_s_at]

Description F18A11.3 /REP_DB=WormBase Gene ID /WP=CE09453 /TR=O01323 /GB=CAB04134.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 55      6grp_total > 72      4grp_total > 09      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2248
1 2 3 4 range
A 1028.8
(-3)
P 		1558.3
(-0.9)
P 		1462.7
(-1.3)
P 		2567.5
(3)
P 		1539
B 1110.7
(-3)
P 		1124.8
(-3)
P 		1440.9
(-2)
P 		3159.3
(3)
P 		2049
C 981.7
(-3)
P 		1058.6
(-2.8)
P 		1197.6
(-2.4)
P 		3229.3
(3)
P 		2248
avr 1040.4
(-3) 		1247.2
(-2.4) 		1367.1
(-2) 		2985.4
(3) 		1945

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1063
1 2 3 4 5 6 range
A 1291.9
(-3)
P 		1476.1
(-1.9)
P 		1802.4
(0.2)
P 		2254.1
(3)
P 		1547.9
(-1.4)
P 		1392.7
(-2.4)
P 		962
B 1190.7
(-3)
P 		1503.9
(-0.8)
P 		2063.3
(3)
P 		1623.8
(-0)
P 		1571.5
(-0.4)
P 		1338.9
(-2)
P 		873
C 1452.1
(-2)
P 		1360.7
(-3)
P 		1878.3
(2.6)
P 		1911.5
(3)
P 		1757.8
(1.3)
P 		1475.2
(-1.8)
P 		551
avr 1311.6
(-3) 		1446.9
(-1.7) 		1914.7
(2.9) 		1929.8
(3) 		1625.7
(0) 		1402.3
(-2.1) 		618
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 374.6
(1.9)
P 		338.3
(-3)
P 		382.4
(3)
P 		375.8
(2.1)
P 		44
B 354.2
(-1.8)
P 		277.8
(-3)
P 		333.9
(-2.1)
P 		673.2
(3)
P 		395
C 325
(-2.5)
P 		304.4
(-3)
P 		417.4
(-0.2)
P 		544.5
(3)
P 		240
avr 351.3
(-1.8) 		306.8
(-3) 		377.9
(-1.1) 		531.2
(3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 238.2
(-3)
P 		525
(2.2)
P 		392.5
(-0.2)
P 		571.7
(3)
P 		467.1
(1.1)
P 		339.1
(-1.2)
P 		334
B 414.3
(-3)
P 		500.6
(-0.7)
P 		501
(-0.7)
P 		430.1
(-2.6)
P 		638.5
(3)
P 		499.3
(-0.7)
P 		224
C 538.2
(2)
P 		415.2
(-2)
P 		478.1
(0)
P 		384.4
(-3)
P 		568.8
(3)
P 		493.8
(0.6)
P 		184
avr 396.9
(-3) 		480.3
(0.1) 		457.2
(-0.8) 		462.1
(-0.6) 		558.1
(3) 		444.1
(-1.2) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194155_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3365
Sequence Type Exemplar sequence
Representative Public ID F18A11.3 NCBI
Target Description F18A11.3 /REP_DB=WormBase Gene ID /WP=CE09453 /TR=O01323 /GB=CAB04134.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064371 NCBI Caenorhabditis elegans F18A11.3 (F18A11.3) mRNA, complete cds. 11/11 None
SNAP00000029952 ENSEMBL cdna:SNAP chromosome:CEL140:II:13036372:13036734:-1 11/11 None
GENEFINDER00000029962 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13036327:13036734:-1 11/11 None
F18A11.3 ENSEMBL cdna:known chromosome:CEL140:II:13036244:13036715:-1 gene:F18A11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13036368-13036695(-) 97.72 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A11.3
Entrez Gene 174946 Entrez gene
SwissProt O01323 EMBL-EBI
WormBase CE09453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59427 Hypothetical protein CBG02799 [Caenorhabditis briggsae] 4.0E-19
blast CAE59427 Hypothetical protein CBG02799 [Caenorhabditis briggsae] 5.0E-19
blast CAB04134 Hypothetical protein F18A11.3 [Caenorhabditis elegans] ref|NP_496772.1| F18A11.3 [Caenorhabditis elegans] 2.0E-17
blast CAB04134 Hypothetical protein F18A11.3 [Caenorhabditis elegans] ref|NP_496772.1| F18A11.3 [Caenorhabditis elegans] 3.0E-17
blast CAE59427 Hypothetical protein CBG02799 [Caenorhabditis briggsae] 4.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000029952 1 7-29
GENEFINDER00000029962 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:194155_S_AT
cagagtactgccacagcgatgggtgaacttcctggacccgattctctatccgacgtgccc
cgtgaaaatcccggaacctgagaataagaaagaggttgaagaagagaaaaaagacgcacc
atgctgcgcaaacacaactgaagccactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGTACTGCCACAGCGATGGGTG 145 207 51 Antisense
GTACTGCCACAGCGATGGGTGAACT 330 459 55 Antisense
GCCACAGCGATGGGTGAACTTCCTG 156 279 60 Antisense
GCGATGGGTGAACTTCCTGGACCCG 93 291 66 Antisense
ATGGGTGAACTTCCTGGACCCGATT 288 49 69 Antisense
GTGAAAATCCCGGAACCTGAGAATA 6 483 112 Antisense
AGAGAAAAAAGACGCACCATGCTGC 535 69 153 Antisense
AAAGACGCACCATGCTGCGCAAACA 202 123 160 Antisense
CGCACCATGCTGCGCAAACACAACT 255 255 165 Antisense
CCATGCTGCGCAAACACAACTGAAG 497 271 169 Antisense
GCGCAAACACAACTGAAGCCACTGT 78 289 176 Antisense
Sequence Source Affymetrix Proprietary Database