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[194153_at]

Description g6843 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 61      6grp_total > 11      4grp_total > 02      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9124
1 2 3 4 range
A 466.8
(-2.8)
P 		224.5
(-3)
P 		288.7
(-2.9)
P 		7296.8
(3)
P 		7072
B 770.6
(-1.6)
P 		207.8
(-3)
P 		369.2
(-2.6)
P 		2646.6
(3)
P 		2439
C 694.8
(-2.7)
P 		213.3
(-3)
P 		233.8
(-3)
P 		9331.7
(3)
P 		9118
avr 644.1
(-2.6) 		215.2
(-3) 		297.2
(-2.9) 		6425
(3) 		6210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1480
1 2 3 4 5 6 range
A 272.6
(-2.2)
P 		212.3
(-2.4)
P 		1397.7
(3)
P 		138.5
(-2.8)
P 		439.5
(-1.4)
P 		89.4
(-3)
P 		1308
B 431.8
(1)
P 		562.9
(3)
P 		294.8
(-1.1)
P 		273.7
(-1.5)
P 		173.2
(-3)
P 		300.8
(-1)
P 		390
C 106.4
(-2.8)
P 		1534.4
(3)
P 		103.2
(-2.8)
P 		286.7
(-2.1)
P 		54.5
(-3)
P 		315.8
(-1.9)
P 		1480
avr 270.3
(-2.5) 		769.9
(3) 		598.6
(1.1) 		233
(-2.9) 		222.4
(-3) 		235.3
(-2.9) 		548
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1525
1 2 3 4 range
A 169.9
(-2.3)
P 		48.7
(-3)
P 		75.5
(-2.8)
P 		1068.1
(3)
P 		1019
B 245.7
(-0.7)
P 		51.3
(-3)
P 		85.6
(-2.6)
P 		564
(3)
P 		513
C 230
(-2.3)
P 		61.3
(-3)
P 		81.5
(-2.9)
P 		1573.5
(3)
P 		1512
avr 215.2
(-2) 		53.8
(-3) 		80.9
(-2.8) 		1068.5
(3) 		1015

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 50.3
(-2.4)
P 		75.5
(-1.9)
P 		304.4
(3)
P 		35.1
(-2.7)
P 		132.6
(-0.6)
P 		21.8
(-3)
P 		283
B 150.2
(1.1)
P 		187.4
(3)
P 		71.6
(-2.9)
P 		72.5
(-2.9)
P 		70.4
(-3)
P 		112.2
(-0.9)
P 		117
C 39.5
(-2.7)
P 		468.2
(3)
P 		26.3
(-2.9)
P 		57.7
(-2.5)
P 		17.7
(-3)
P 		105.7
(-1.8)
P 		451
avr 80
(-2.2) 		243.7
(3) 		134.1
(-0.5) 		55.1
(-3) 		73.6
(-2.4) 		79.9
(-2.2) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28088
Sequence Type Exemplar sequence
Representative Public ID 6843 NCBI
Target Description g6843 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) M13912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M13912 NCBI C.elegans (nematode) 5S rRNA. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17123545-17123664(+) 100.0 100.0
chrV:17124521-17124640(+) 100.0 100.0
chrV:17125497-17125616(+) 100.0 100.0
chrV:17126473-17126592(+) 100.0 100.0
chrV:17127449-17127568(+) 100.0 100.0
chrV:17128425-17128544(+) 100.0 100.0
chrV:17130981-17131100(+) 100.0 100.0
chrV:17131953-17132072(+) 100.0 100.0
chrV:17132939-17133058(+) 100.0 100.0
chrV:17133915-17134034(+) 100.0 100.0
chrV:17431455-17431574(+) 100.0 100.0
chrV:17118480-17118599(-) 100.0 100.0
chrV:17120440-17120559(-) 99.16 99.16
Sequence
Target Sequence 
>C. ELEGANS:194153_AT
gcttacgaccatatcacgttgaatgcacgccatcccgtccgatctggcaagttaagcaac
gttgagtccagttagtacttggatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTACGACCATATCACGTTGAATG 82 299 13 Antisense
TACGACCATATCACGTTGAATGCAC 589 647 16 Antisense
GACCATATCACGTTGAATGCACGCC 599 383 19 Antisense
TATCACGTTGAATGCACGCCATCCC 62 659 24 Antisense
TCCCGTCCGATCTGGCAAGTTAAGC 345 595 45 Antisense
GTCCGATCTGGCAAGTTAAGCAACG 463 475 49 Antisense
CGATCTGGCAAGTTAAGCAACGTTG 667 245 52 Antisense
GGCAAGTTAAGCAACGTTGAGTCCA 406 529 58 Antisense
GTTAAGCAACGTTGAGTCCAGTTAG 324 445 63 Antisense
GCAACGTTGAGTCCAGTTAGTACTT 644 291 68 Antisense
GAGTCCAGTTAGTACTTGGATCGGA 497 399 76 Antisense
Sequence Source GenBank