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[194152_x_at]

Description g773429 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_total > 01      4grp_total > 27      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 41.1
(-0.8)
A 		55.6
(0.7)
A 		19.2
(-3)
A 		78.9
(3)
M 		60
B 50
(0.8)
A 		56.3
(3)
A 		39.3
(-3)
A 		39.9
(-2.8)
A 		17
C 53.8
(-2.6)
A 		60.2
(-1.7)
A 		50.5
(-3)
M 		95.5
(3)
M 		45
avr 48.3
(-0.9) 		57.4
(0.6) 		36.3
(-3) 		71.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 17.2
(-3)
A 		71.3
(3)
P 		65.6
(2.4)
P 		42
(-0.2)
A 		29.7
(-1.6)
A 		19.7
(-2.7)
A 		54
B 66.1
(1.4)
P 		77.5
(3)
P 		46
(-1.3)
P 		33.6
(-3)
A 		35.5
(-2.7)
A 		46.7
(-1.2)
A 		44
C 55.6
(1.3)
A 		70.2
(2.6)
A 		4.5
(-3)
A 		34.5
(-0.5)
A 		51.1
(0.9)
A 		75.3
(3)
P 		71
avr 46.3
(-1.4) 		73
(3) 		38.7
(-2.7) 		36.7
(-3) 		38.8
(-2.7) 		47.2
(-1.3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15
(3)
A 		12.1
(1.3)
A 		5
(-3)
A 		11.6
(1)
M 		10
B 15.9
(3)
A 		13.9
(1.4)
A 		9.1
(-2.5)
A 		8.5
(-3)
A 		7
C 17.8
(3)
A 		17.3
(1.2)
A 		17.6
(2.3)
M 		16.1
(-3)
M 		2
avr 16.2
(3) 		14.4
(1.1) 		10.6
(-3) 		12.1
(-1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.2
(-3)
A 		25.3
(3)
P 		14.3
(0)
P 		10.7
(-1)
A 		9
(-1.4)
A 		4.8
(-2.6)
A 		22
B 23
(2)
P 		25.8
(3)
P 		11.2
(-2.2)
P 		8.9
(-3)
A 		14.4
(-1)
A 		17.4
(0)
A 		17
C 20.6
(1.9)
A 		21.4
(2.1)
A 		1.1
(-3)
A 		6.9
(-1.6)
A 		16.5
(0.8)
A 		25.2
(3)
P 		24
avr 15.6
(-0.4) 		24.2
(3) 		8.9
(-3) 		8.8
(-3) 		13.3
(-1.2) 		15.8
(-0.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194152_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28089
Sequence Type Exemplar sequence
Representative Public ID 773429 NCBI
Target Description g773429 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) U23938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
U23938 NCBI Caenorhabditis elegans Rab like protein (pra-1) mRNA, partial cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171081 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007834 4/11 Cross Hyb Matching Probes None
Y92C3B.3b 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1080291-1080429(-) 69.16 69.16
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA65452 putative Rab protein, similar to mouse ras-related protein RAB-18, Swiss-Prot Accession Number P35293; Method: conceptual translation supplied by author 1.0E-11
blast AAM44401 Rab family protein 18, isoform b [Caenorhabditis elegans] ref|NP_741092.1| RAB family member (rab-18) [Caenorhabditis elegans] 9.0E-9
blast CAE69127 Hypothetical protein CBG15153 [Caenorhabditis briggsae] gb|AAB38279.1| membrane associated GTP binding protein RAB18 [Caenorhabditis briggsae] 9.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.4E-7
Sequence
Target Sequence 
>C. ELEGANS:194152_X_AT
tcctgattatcggcgaaagtggcgtagggaagtcgagcttaatgctccgattcgtggacg
atgtcgtcgatcctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGATTATCGGCGAAAGTGGCGT 624 593 13 Antisense
GATTATCGGCGAAAGTGGCGTAGGG 549 429 17 Antisense
GAAAGTGGCGTAGGGAAGTCGAGCT 169 361 27 Antisense
GGCGTAGGGAAGTCGAGCTTAATGC 203 539 33 Antisense
GAAGTCGAGCTTAATGCTCCGATTC 129 337 41 Antisense
GAGCTTAATGCTCCGATTCGTGGAC 274 389 47 Antisense
GCTTAATGCTCCGATTCGTGGACGA 429 305 49 Antisense
TAATGCTCCGATTCGTGGACGATGT 647 635 52 Antisense
GCTCCGATTCGTGGACGATGTCGTC 72 295 56 Antisense
GATTCGTGGACGATGTCGTCGATCC 48 433 61 Antisense
CGTGGACGATGTCGTCGATCCTGAA 653 243 65 Antisense
Sequence Source GenBank