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[194151_x_at]

Description g156382 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 55      6grp_total > 91      4grp_total > 61      6grp_cgc > 96      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1611
1 2 3 4 range
A 1868.6
(3)
P 		1295.3
(-0.2)
P 		1833.8
(2.8)
P 		789.9
(-3)
P 		1079
B 2293.4
(3)
P 		1560.5
(0.3)
P 		1674.8
(0.7)
P 		682.8
(-3)
P 		1611
C 1955.4
(3)
P 		1713.8
(1.8)
P 		1792.8
(2.2)
P 		728.6
(-3)
P 		1227
avr 2039.1
(3) 		1523.2
(0.6) 		1767.1
(1.7) 		733.8
(-3) 		1305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2530
1 2 3 4 5 6 range
A 1587
(0.7)
P 		1060.5
(-0.9)
P 		1397.7
(0.1)
P 		2318.4
(3)
P 		1818.8
(1.4)
P 		399.8
(-3)
P 		1919
B 1518.1
(-0.8)
P 		967.3
(-2.2)
P 		907.1
(-2.4)
P 		2929.7
(3)
P 		1594.3
(-0.5)
P 		672.4
(-3)
P 		2257
C 2609.6
(3)
P 		1163.2
(-1.1)
P 		1610.9
(0.2)
P 		2447
(2.5)
P 		1804.9
(0.7)
P 		502.9
(-3)
P 		2107
avr 1904.9
(1.1) 		1063.7
(-1.4) 		1305.2
(-0.7) 		2565
(3) 		1739.3
(0.6) 		525
(-3) 		2040
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 616
1 2 3 4 range
A 680.4
(3)
P 		281.2
(-1.2)
P 		479.4
(0.9)
P 		115.6
(-3)
P 		565
B 731.4
(3)
P 		385.4
(-0.5)
P 		388.1
(-0.5)
P 		145.5
(-3)
P 		586
C 647.3
(3)
P 		492.7
(1.2)
P 		624.8
(2.7)
P 		122.8
(-3)
P 		525
avr 686.4
(3) 		386.4
(-0.2) 		497.4
(1) 		128
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 870
1 2 3 4 5 6 range
A 292.6
(-0.6)
P 		377.2
(0.4)
P 		304.4
(-0.5)
P 		588
(3)
P 		548.8
(2.5)
P 		97.3
(-3)
P 		491
B 528.2
(0.3)
P 		322
(-1.9)
P 		220.3
(-3)
P 		776
(3)
P 		647.7
(1.6)
P 		250.7
(-2.7)
P 		556
C 967.3
(3)
P 		354.9
(-1.6)
P 		410
(-1.2)
P 		492.1
(-0.6)
P 		584.1
(0.1)
P 		168.3
(-3)
P 		799
avr 596
(2.7) 		351.4
(-0.6) 		311.6
(-1.1) 		618.7
(3) 		593.5
(2.7) 		172.1
(-3) 		447
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194151_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26256
Sequence Type Exemplar sequence
Representative Public ID 156382 NCBI
Target Description g156382 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074081
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000009105 ENSEMBL cdna:SNAP chromosome:CEL140:V:14020959:14021207:-1 None
T08G5.10 ENSEMBL cdna:known chromosome:CEL140:V:14020860:14021212:-1 gene:T08G5.10 A 
NM_074081 NCBI Caenorhabditis elegans MeTaLlothionein family member (mtl-2) (mtl-2) mRNA, complete cds. A 
GENEFINDER00000009136 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14020913:14021134:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
M32386 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14020859-14021217(-) 58.67 58.67
Public Domain and Genome References
Gene Title
Gene Symbol mtl-2
Ensembl T08G5.10
Entrez Gene 179899 Entrez gene
SwissProt P17512 EMBL-EBI
WormBase CE25109 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61028 Hypothetical protein T08G5.10 [Caenorhabditis elegans] ref|NP_506482.1| MeTaLlothionein family member (mtl-2) [Caenorhabditis elegans] sp|P17512|MT2_CAEEL Metallothionein-II (MT-II) (Metallothionein-like protein) (MT-Ce) emb|CAA37335.1| metallothionein-II [Caenorhabditis elegans] dbj|BAA04181.1| metallothionein-II [Caenorhabditis elegans] gb|AAA28118.1| metallothionein-like protein gb|AAA28117.1| metallothionein-like protein gb|AAA28111.1| metallothionein-2 1.0E-18
blast T24715 hypothetical protein T08G5.10 - Caenorhabditis elegans 1.0E-18
blast CAE61035 Hypothetical protein CBG04778 [Caenorhabditis briggsae] 6.0E-12
Sequence
Target Sequence 
>C. ELEGANS:194151_X_AT
tttggtcacattttgtacaacattcaagaacaattgcactgcataatataattgggaaat
ttagaattcatcgttttatacataaaagtgaaactacgtagactaccttcaaagctgggg
gccccggggagttataataaattgaatcaatacaaccataaaaatcaaatcgtcgatgca
ccaagctaacactactcaaaaatggtctgcaagtgtgactgcaaaaaccaaaattgttcc
tgcaacaccggaactaaagattgcgattgctccgacgccaagtgctgtgagcaatactgc
tgcccaactgccagtgagaagaaatgctgcaaatctggatgtgccggaggatgcaagtgt
gccaactgcgaatgtgctcaggctgctcattaattttgaaattaatactcttccctttga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGTCACATTTTGTACAACATTC 634 665 33 Antisense
TAGACTACCTTCAAAGCTGGGGGCC 418 567 131 Antisense
CAAATCGTCGATGCACCAAGCTAAC 109 193 198 Antisense
GATGCACCAAGCTAACACTACTCAA 189 413 207 Antisense
TAAAGATTGCGATTGCTCCGACGCC 466 641 287 Antisense
CTCCGACGCCAAGTGCTGTGAGCAA 137 235 302 Antisense
GCTGTGAGCAATACTGCTGCCCAAC 559 295 316 Antisense
CTGCTGCCCAACTGCCAGTGAGAAG 458 237 329 Antisense
AGTGTGCCAACTGCGAATGTGCTCA 615 59 388 Antisense
GTGCTCAGGCTGCTCATTAATTTTG 343 479 406 Antisense
TGAAATTAATACTCTTCCCTTTGAA 516 569 429 Antisense
Sequence Source GenBank