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[194150_x_at]

Description g156380 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 45      6grp_total > 91      4grp_total > 61      6grp_cgc > 50      6grp_high1_sub > 04      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2285
1 2 3 4 range
A 3030.6
(3)
P 		2624.9
(1.7)
P 		2879.5
(2.5)
P 		1115.6
(-3)
P 		1915
B 3392.2
(3)
P 		2475.9
(0.5)
P 		2571
(0.7)
P 		1222.2
(-3)
P 		2170
C 3209.5
(3)
P 		2892.8
(2.1)
P 		2585.1
(1.2)
P 		1107.4
(-3)
P 		2102
avr 3210.8
(3) 		2664.5
(1.4) 		2678.5
(1.5) 		1148.4
(-3) 		2062

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3025
1 2 3 4 5 6 range
A 2958.4
(2.1)
P 		1882.4
(-0.3)
P 		3002.2
(2.2)
P 		3358.7
(3)
P 		2887
(1.9)
P 		693.3
(-3)
P 		2665
B 2860.4
(1.6)
P 		2431.3
(0.6)
P 		2121.5
(-0.1)
P 		3464.5
(3)
P 		3009.1
(1.9)
P 		863.9
(-3)
P 		2601
C 2591.8
(0.6)
P 		2254.7
(-0.1)
P 		2058.5
(-0.5)
P 		3718
(3)
P 		2509.4
(0.4)
P 		894.8
(-3)
P 		2823
avr 2803.5
(1.4) 		2189.5
(0.1) 		2394.1
(0.5) 		3513.7
(3) 		2801.8
(1.4) 		817.3
(-3) 		2696
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 940
1 2 3 4 range
A 1103.5
(3)
P 		569.8
(-0.4)
P 		752.8
(0.8)
P 		163.3
(-3)
P 		940
B 1081.7
(3)
P 		611.5
(-0.4)
P 		595.8
(-0.6)
P 		260.5
(-3)
P 		821
C 1062.4
(3)
P 		831.7
(1.4)
P 		901
(1.9)
P 		186.7
(-3)
P 		876
avr 1082.5
(3) 		671
(0.2) 		749.9
(0.7) 		203.5
(-3) 		879

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1054
1 2 3 4 5 6 range
A 545.4
(0.2)
P 		669.5
(1.3)
P 		653.8
(1.1)
P 		851.9
(2.8)
P 		871.2
(3)
P 		168.8
(-3)
P 		702
B 995.3
(1.5)
P 		809.3
(0.2)
P 		515.2
(-1.7)
P 		917.6
(1)
P 		1222.6
(3)
P 		322.2
(-3)
P 		900
C 960.7
(3)
P 		688
(0.5)
P 		523.9
(-1)
P 		747.7
(1.1)
P 		812
(1.7)
P 		299.5
(-3)
P 		661
avr 833.8
(1.9) 		722.3
(0.9) 		564.3
(-0.4) 		839.1
(1.9) 		968.6
(3) 		263.5
(-3) 		705
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194150_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26255
Sequence Type Exemplar sequence
Representative Public ID 156380 NCBI
Target Description g156380 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) M32386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M32386 NCBI C.elegans metallothionein-like protein (MT-Ce) mRNA, clone MTCe-1, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074081 8/11 Cross Hyb Matching Probes A 
SNAP00000009105 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009136 8/11 Cross Hyb Matching Probes None
T08G5.10 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14020859-14021228(-) 79.39 79.39
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61028 Hypothetical protein T08G5.10 [Caenorhabditis elegans] ref|NP_506482.1| MeTaLlothionein family member (mtl-2) [Caenorhabditis elegans] sp|P17512|MT2_CAEEL Metallothionein-II (MT-II) (Metallothionein-like protein) (MT-Ce) emb|CAA37335.1| metallothionein-II [Caenorhabditis elegans] dbj|BAA04181.1| metallothionein-II [Caenorhabditis elegans] gb|AAA28118.1| metallothionein-like protein gb|AAA28117.1| metallothionein-like protein gb|AAA28111.1| metallothionein-2 1.0E-18
blast T24715 hypothetical protein T08G5.10 - Caenorhabditis elegans 1.0E-18
blast CAE61035 Hypothetical protein CBG04778 [Caenorhabditis briggsae] 6.0E-12
Sequence
Target Sequence 
>C. ELEGANS:194150_X_AT
ttaacatttatttcagctttcaagaaaaaacctcgaacaatatcaattagtaggaatttc
cttcaaaggctctactcaaaaatggtctgcaagtgtgactgcaaaaaccaaaattgttcc
tgcaacaccggaactaaagattgcgattgctccgacgccaagtgctgtgagcaatactgc
tgcccaactgccagtgagaagaaatgctgcaaatctggatgtgccggaggatgcaagtgt
gccaactgcgaatgtgctcaggctgctcattaattttgaaattaatactcttccctttga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAACATTTATTTCAGCTTTCAAGA 334 683 33 Antisense
GGAATTTCCTTCAAAGGCTCTACTC 483 533 85 Antisense
CCAAAATTGTTCCTGCAACACCGGA 551 275 140 Antisense
TAAAGATTGCGATTGCTCCGACGCC 467 641 167 Antisense
CTCCGACGCCAAGTGCTGTGAGCAA 138 235 182 Antisense
GCTGTGAGCAATACTGCTGCCCAAC 560 295 196 Antisense
CTGCTGCCCAACTGCCAGTGAGAAG 459 237 209 Antisense
GCTGCAAATCTGGATGTGCCGGAGG 79 297 238 Antisense
AGTGTGCCAACTGCGAATGTGCTCA 616 59 268 Antisense
GTGCTCAGGCTGCTCATTAATTTTG 344 479 286 Antisense
TGAAATTAATACTCTTCCCTTTGAA 517 569 309 Antisense
Sequence Source GenBank