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[194149_x_at]

Description g1619860 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_total > 50      4grp_total > 43      6grp_cgc > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 62.4
(-3)
A 		117.3
(3)
A 		74.5
(-1.7)
A 		62.8
(-3)
A 		55
B 83.9
(1.4)
P 		103.5
(3)
A 		48.8
(-1.5)
A 		30
(-3)
A 		74
C 97.4
(0)
M 		128.2
(3)
P 		66.1
(-3)
A 		99.6
(0.2)
A 		62
avr 81.2
(-1) 		116.3
(3) 		63.1
(-3) 		64.1
(-2.9) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 89.7
(3)
A 		61.1
(-0.4)
A 		38.8
(-3)
A 		84.5
(2.4)
A 		63.1
(-0.1)
A 		42.6
(-2.6)
A 		51
B 73
(-3)
A 		97.8
(0.6)
M 		114.8
(3)
M 		79.8
(-2)
A 		91.4
(-0.4)
M 		89.7
(-0.6)
A 		42
C 122.7
(3)
M 		68.3
(-3)
A 		112.6
(1.9)
A 		113.8
(2)
A 		70.4
(-2.8)
M 		88.7
(-0.8)
P 		54
avr 95.1
(3) 		75.7
(-2.4) 		88.7
(1.2) 		92.7
(2.3) 		75
(-2.6) 		73.7
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 22.7
(2)
A 		25.5
(3)
A 		19.5
(0.8)
A 		9.2
(-3)
A 		16
B 26.8
(3)
P 		25.6
(2.6)
A 		11.3
(-1.6)
A 		6.4
(-3)
A 		20
C 32.2
(1.6)
M 		36.9
(3)
P 		23
(-1.1)
A 		16.8
(-3)
A 		20
avr 27.2
(2.3) 		29.3
(3) 		17.9
(-0.7) 		10.8
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 16.5
(0.7)
A 		21.7
(3)
A 		8.4
(-3)
A 		21.4
(2.9)
A 		19
(1.8)
A 		10.4
(-2.1)
A 		13
B 25.4
(-1.4)
A 		32.5
(1.3)
M 		27.9
(-0.5)
M 		21.1
(-3)
A 		37.1
(3)
M 		33.4
(1.6)
A 		16
C 45.5
(3)
M 		20.8
(-3)
A 		28.7
(-1.1)
A 		22.9
(-2.5)
A 		22.8
(-2.5)
M 		29.7
(-0.8)
P 		25
avr 29.1
(3) 		25
(-0.3) 		21.7
(-3) 		21.8
(-2.9) 		26.3
(0.7) 		24.5
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194149_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28099
Sequence Type Exemplar sequence
Representative Public ID 1619860 NCBI
Target Description g1619860 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) U68261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
U68261 NCBI Caenorhabditis elegans rab19-like mRNA, partial cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066927 6/11 Cross Hyb Matching Probes A 
AF228692 1/11 Cross Hyb Matching Probes A B 
GENEFINDER00000002987 5/11 Cross Hyb Matching Probes None
SNAP00000002979 1/11 Cross Hyb Matching Probes None
Y45F3A.2 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10562896-10563222(+) 88.27 88.27
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB16976 rab19-like [Caenorhabditis elegans] 9.0E-24
blast CAA21489 Hypothetical protein Y45F3A.2 [Caenorhabditis elegans] ref|NP_499328.1| RAB family member (rab-30) [Caenorhabditis elegans] 1.0E-22
blast CAE71446 Hypothetical protein CBG18357 [Caenorhabditis briggsae] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 8.7E-14
Sequence
Target Sequence 
>C. ELEGANS:194149_X_AT
aattacccaagtttgaggctcgccatcattggatggaggattacaagtatctattcaaag
tggtacttgtcccaaatgcgggcgttgggaaaacatgtctagtcagaaagttcacacagg
gtatatttcctcctggtcaaagtgcaacaatcggcgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTACCCAAGTTTGAGGCTCGCCA 523 175 18 Antisense
AGTTTGAGGCTCGCCATCATTGGAT 506 63 27 Antisense
GAGGCTCGCCATCATTGGATGGAGG 695 405 32 Antisense
GATGGAGGATTACAAGTATCTATTC 255 399 49 Antisense
CAAAGTGGTACTTGTCCCAAATGCG 320 193 73 Antisense
TACTTGTCCCAAATGCGGGCGTTGG 583 639 81 Antisense
GGGCGTTGGGAAAACATGTCTAGTC 192 241 97 Antisense
ATGTCTAGTCAGAAAGTTCACACAG 267 49 112 Antisense
GTTCACACAGGGTATATTTCCTCCT 478 443 127 Antisense
ATTTCCTCCTGGTCAAAGTGCAACA 71 17 142 Antisense
GTCAAAGTGCAACAATCGGCGTCGA 197 463 153 Antisense
Sequence Source GenBank