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[194147_x_at]

Description g4688637 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_total > 40      4grp_total > 28      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 79.7
(-0.7)
A 		77.8
(-0.7)
A 		10.3
(-3)
A 		189.4
(3)
A 		179
B 157
(3)
A 		113
(-0.6)
A 		107.3
(-1.1)
A 		84
(-3)
A 		73
C 94.9
(-1.4)
A 		115.4
(1.5)
A 		84.1
(-3)
A 		125.6
(3)
A 		42
avr 110.5
(0.9) 		102.1
(0.2) 		67.2
(-3) 		133
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 102.8
(0.7)
P 		145.1
(3)
A 		105.8
(0.9)
A 		64.4
(-1.4)
A 		81.1
(-0.5)
A 		35.3
(-3)
A 		110
B 78.5
(0.4)
A 		86.3
(1.2)
A 		83.3
(0.9)
A 		102.3
(3)
M 		80.1
(0.5)
A 		48.2
(-3)
A 		54
C 28.8
(-3)
A 		66.1
(-1.6)
A 		106.1
(-0)
A 		184.8
(3)
A 		38.9
(-2.6)
A 		64.2
(-1.6)
A 		156
avr 70
(-1.2) 		99.2
(1.4) 		98.4
(1.3) 		117.2
(3) 		66.7
(-1.5) 		49.2
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 29
(3)
A 		16.9
(0.2)
A 		2.7
(-3)
A 		27.7
(2.7)
A 		26
B 50.1
(3)
A 		27.9
(-1.1)
A 		24.9
(-1.7)
A 		17.9
(-3)
A 		32
C 31.4
(2.1)
A 		33.2
(3)
A 		29.3
(1.1)
A 		21.2
(-3)
A 		12
avr 36.8
(3) 		26
(-0.6) 		19
(-3) 		22.3
(-1.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 19
(-1.5)
P 		51.6
(3)
A 		23
(-1)
A 		16.3
(-1.9)
A 		24.5
(-0.8)
A 		8.6
(-3)
A 		43
B 27.3
(0.8)
A 		28.7
(1.4)
A 		20.2
(-2.1)
A 		27.1
(0.8)
M 		32.5
(3)
A 		18
(-3)
A 		15
C 10.7
(-3)
A 		20.2
(-0.8)
A 		27
(0.7)
A 		37.2
(3)
A 		12.6
(-2.6)
A 		21.5
(-0.6)
A 		27
avr 19
(-2) 		33.5
(3) 		23.4
(-0.5) 		26.9
(0.7) 		23.2
(-0.5) 		16
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194147_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28085
Sequence Type Exemplar sequence
Representative Public ID 4688637 NCBI
Target Description g4688637 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170967 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
ZK909.2d ENSEMBL cdna:known chromosome:CEL140:I:14948456:14959187:1 gene:ZK909.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170958 3/11 Cross Hyb Matching Probes A 
NM_170959 3/11 Cross Hyb Matching Probes A 
NM_170960 3/11 Cross Hyb Matching Probes A 
NM_170961 3/11 Cross Hyb Matching Probes A 
NM_061205 3/11 Cross Hyb Matching Probes A 
NM_061204 3/11 Cross Hyb Matching Probes A 
NM_170962 3/11 Cross Hyb Matching Probes A 
NM_170963 3/11 Cross Hyb Matching Probes A 
NM_170964 3/11 Cross Hyb Matching Probes A 
NM_170965 3/11 Cross Hyb Matching Probes A 
NM_170966 7/11 Cross Hyb Matching Probes A 
ZK909.2h.1 3/11 Cross Hyb Matching Probes None
ZK909.2h.2 3/11 Cross Hyb Matching Probes None
ZK909.2j 3/11 Cross Hyb Matching Probes A 
ZK909.2g 3/11 Cross Hyb Matching Probes A 
ZK909.2i 3/11 Cross Hyb Matching Probes A 
ZK909.2b 3/11 Cross Hyb Matching Probes A 
ZK909.2a 3/11 Cross Hyb Matching Probes A 
ZK909.2f 3/11 Cross Hyb Matching Probes A 
ZK909.2k 3/11 Cross Hyb Matching Probes A 
ZK909.2l 3/11 Cross Hyb Matching Probes A 
ZK909.2e 3/11 Cross Hyb Matching Probes A 
ZK909.2m 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565407 13 1 NM_061205 193173_at (11)
NM_170959 193173_at (11)
NM_170960 194143_x_at (11)
NM_170961 193173_at (11)
NM_170963 193173_at (11)
NM_170965 193173_at (11)
NM_170967 193173_at (11), 194147_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14948386-14949011(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK909.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45614 Hypothetical protein ZK909.2d [Caenorhabditis elegans] ref|NP_740963.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45616 Hypothetical protein ZK909.2e [Caenorhabditis elegans] emb|CAD45583.1| Hypothetical protein ZK909.2e [Caenorhabditis elegans] ref|NP_740961.1| protein KINase family member (kin-1) [Caenorhabditis elegans] sp|P21137|KAPC_CAEEL cAMP-dependent protein kinase catalytic subunit (PKA C) 0.0
blast CAD45621 Hypothetical protein ZK909.2j [Caenorhabditis elegans] emb|CAD45588.1| Hypothetical protein ZK909.2j [Caenorhabditis elegans] ref|NP_740955.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-68
hanks 1.1.4 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Sequence
Target Sequence 
>C. ELEGANS:194147_X_AT
tcaccatgtcgtccagtagcaataaaaaagtgcaagtcaagtttttcaaagaattcctgg
acaaggcacgcgaagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCATGTCGTCCAGTAGCAATAA 687 625 15 Antisense
CACCATGTCGTCCAGTAGCAATAAA 358 201 16 Antisense
ACCATGTCGTCCAGTAGCAATAAAA 44 87 17 Antisense
CCATGTCGTCCAGTAGCAATAAAAA 34 273 18 Antisense
ATGTCGTCCAGTAGCAATAAAAAAG 169 49 20 Antisense
GTCGTCCAGTAGCAATAAAAAAGTG 409 341 22 Antisense
AAAGTGCAAGTCAAGTTTTTCAAAG 427 121 41 Antisense
GTCAAGTTTTTCAAAGAATTCCTGG 493 463 50 Antisense
AAGAATTCCTGGACAAGGCACGCGA 630 151 63 Antisense
GAATTCCTGGACAAGGCACGCGAAG 91 323 65 Antisense
ATTCCTGGACAAGGCACGCGAAGAC 184 9 67 Antisense
Sequence Source GenBank