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[194146_x_at]

Description g6984217 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_total > 80      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 116.5
(-2.3)
A 		131.6
(-1.8)
A 		97.1
(-3)
A 		266.6
(3)
P 		170
B 229.5
(3)
A 		89.2
(-3)
A 		125.3
(-1.5)
A 		185.8
(1.1)
P 		140
C 122
(-3)
M 		171
(-1.4)
A 		146.5
(-2.2)
A 		304.5
(3)
P 		183
avr 156
(-1.5) 		130.6
(-2.6) 		123
(-3) 		252.3
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 127
(-0.8)
M 		100.7
(-3)
P 		146.1
(0.8)
P 		171.6
(3)
P 		111.2
(-2.1)
P 		162.1
(2.2)
P 		71
B 119
(-3)
A 		179.8
(0.8)
P 		150.6
(-1)
P 		214.5
(3)
P 		153.8
(-0.8)
P 		123.9
(-2.7)
P 		96
C 104.3
(-3)
M 		183.1
(2.7)
P 		116.3
(-2.1)
A 		186.6
(3)
P 		123.3
(-1.6)
P 		154.9
(0.7)
P 		82
avr 116.8
(-3) 		154.5
(0.1) 		137.7
(-1.3) 		190.9
(3) 		129.4
(-2) 		147
(-0.6) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 42.4
(3)
A 		28.6
(-1.9)
A 		25.4
(-3)
A 		39
(1.8)
P 		17
B 73.2
(3)
A 		22
(-3)
A 		29
(-2.2)
A 		39.6
(-0.9)
P 		51
C 40.4
(-3)
M 		49.2
(1.8)
A 		51.1
(2.9)
A 		51.3
(3)
P 		11
avr 52
(3) 		33.3
(-3) 		35.2
(-2.4) 		43.3
(0.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 23.4
(-3)
M 		35.8
(0.7)
P 		31.8
(-0.5)
P 		43.5
(3)
P 		33.6
(0)
P 		39.5
(1.8)
P 		20
B 41.4
(-1.9)
A 		59.8
(2.4)
P 		36.6
(-3)
P 		56.8
(1.7)
P 		62.5
(3)
P 		46.2
(-0.8)
P 		26
C 38.6
(-0.9)
M 		55.9
(3)
P 		29.6
(-3)
A 		37.5
(-1.2)
P 		39.9
(-0.7)
P 		51.9
(2.1)
P 		26
avr 34.5
(-2.4) 		50.5
(3) 		32.7
(-3) 		45.9
(1.4) 		45.3
(1.2) 		45.9
(1.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194146_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26254
Sequence Type Exemplar sequence
Representative Public ID 6984217 NCBI
Target Description g6984217 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077211(11), NM_077210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077211 NCBI Caenorhabditis elegans F49E2.1b (F49E2.1) mRNA, complete cds. 11/11 A 
NM_077210 NCBI Caenorhabditis elegans F49E2.1a (F49E2.1) mRNA, complete cds. 11/11 None
SNAP00000006379 ENSEMBL cdna:SNAP chromosome:CEL140:X:9563191:9565604:-1 9/11 None
F49E2.1b ENSEMBL cdna:known chromosome:CEL140:X:9561843:9565911:-1 gene:F49E2.1 11/11 A 
F49E2.1a ENSEMBL cdna:known chromosome:CEL140:X:9563086:9565911:-1 gene:F49E2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074910 2/11 Cross Hyb Matching Probes A 
SNAP00000000010 2/11 Cross Hyb Matching Probes None
GENEFINDER00000000018 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006385 6/11 Cross Hyb Matching Probes None
F49H6.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9563085-9564520(-) 99.26 99.26
Public Domain and Genome References
Ensembl F49E2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42301 Hypothetical protein F49E2.1b [Caenorhabditis elegans] ref|NP_509612.2| F49E2.1b [Caenorhabditis elegans] sp|Q20624|YL71_CAEEL Hypothetical protein F49E2.1 in chromosome X 0.0
blast CAE69793 Hypothetical protein CBG16084 [Caenorhabditis briggsae] 0.0
blast CAC42302 Hypothetical protein F49E2.1a [Caenorhabditis elegans] ref|NP_509611.3| F49E2.1a [Caenorhabditis elegans] 0.0
blast CAB04440 Hypothetical protein F49H6.5 [Caenorhabditis elegans] ref|NP_507311.1| F49H6.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002820 EMBL-EBI Molybdopterin cofactor biosynthesis protein MoaC 1.8E-88
Pfam IPR010505 EMBL-EBI Molybdenum cofactor synthesis C 5.6E-49
Pfam IPR007197 EMBL-EBI Radical SAM 7.7E-40
Pfam IPR010505 EMBL-EBI Molybdenum cofactor synthesis C 1.5E-48
Pfam IPR010505 EMBL-EBI Molybdenum cofactor synthesis C 1.5E-48
Pfam IPR007197 EMBL-EBI Radical SAM 7.7E-40
Sequence
Target Sequence 
>C. ELEGANS:194146_X_AT
gtatgcctccatggaaattccgaagtaagtctacgtgatagaattcgttgtggcgactct
gacgaacagctttccgaggtcattcaaaaagccgttaacaacaaaaaagctagacatgcc
ggaatggacgctctgaagaacctgccaaatcgtccaatgattcttatcgggggctaactc
ctgtaacatccgcatcttctatacttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCCTCCATGGAAATTCCGAAG 86 455 42 Antisense
AGAATTCGTTGTGGCGACTCTGACG 495 75 81 Antisense
GACTCTGACGAACAGCTTTCCGAGG 355 373 96 Antisense
GAACAGCTTTCCGAGGTCATTCAAA 616 351 105 Antisense
GAGGTCATTCAAAAAGCCGTTAACA 231 401 117 Antisense
GCTAGACATGCCGGAATGGACGCTC 197 301 150 Antisense
GAATGGACGCTCTGAAGAACCTGCC 222 333 163 Antisense
TGAAGAACCTGCCAAATCGTCCAAT 293 575 175 Antisense
TCGTCCAATGATTCTTATCGGGGGC 537 605 191 Antisense
TATCGGGGGCTAACTCCTGTAACAT 4 647 206 Antisense
TAACATCCGCATCTTCTATACTTGT 638 639 225 Antisense
Sequence Source GenBank