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[194145_x_at]

Description g1401278 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 25      6grp_total > 24      4grp_total > 38      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 465
(3)
P 		200
(-1.6)
P 		119.7
(-3)
A 		138.1
(-2.7)
P 		345
B 291.5
(3)
P 		165.6
(-1.2)
P 		111.7
(-3)
M 		193.4
(-0.3)
P 		180
C 518.6
(3)
P 		163.4
(-2.4)
P 		123.2
(-3)
P 		214.5
(-1.6)
P 		395
avr 425
(3) 		176.3
(-1.9) 		118.2
(-3) 		182
(-1.8) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 252.3
(0.6)
P 		339.9
(3)
P 		263
(0.9)
P 		197.5
(-0.8)
P 		150.4
(-2.1)
M 		117.8
(-3)
M 		222
B 317.6
(3)
P 		228.9
(0.6)
P 		196.2
(-0.3)
P 		169.8
(-1)
P 		133.6
(-2)
P 		97.1
(-3)
P 		221
C 360.2
(3)
P 		343.3
(2.6)
P 		228.1
(0.1)
P 		175.6
(-1)
P 		136.8
(-1.8)
P 		82.3
(-3)
M 		278
avr 310
(3) 		304
(2.8) 		229.1
(0.7) 		181
(-0.7) 		140.3
(-1.8) 		99.1
(-3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 169.3
(3)
P 		43.4
(-2.1)
P 		31.3
(-2.6)
A 		20.2
(-3)
P 		149
B 93
(3)
P 		40.9
(-1.7)
P 		25.9
(-3)
M 		41.2
(-1.6)
P 		67
C 171.7
(3)
P 		47
(-2.5)
P 		43
(-2.7)
P 		36.2
(-3)
P 		136
avr 144.7
(3) 		43.8
(-2.4) 		33.4
(-3) 		32.5
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 46.5
(-1.8)
P 		120.9
(3)
P 		57.3
(-1.1)
P 		50.1
(-1.6)
P 		45.4
(-1.9)
M 		28.7
(-3)
M 		92
B 110.5
(3)
P 		76.2
(0.2)
P 		47.7
(-2.1)
P 		45
(-2.3)
P 		54.3
(-1.5)
P 		36.2
(-3)
P 		74
C 133.5
(3)
P 		104.7
(1.4)
P 		58.1
(-1.3)
P 		35.3
(-2.6)
P 		44.3
(-2)
P 		27.5
(-3)
M 		106
avr 96.8
(2.7) 		100.6
(3) 		54.4
(-1) 		43.5
(-1.9) 		48
(-1.5) 		30.8
(-3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194145_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28091
Sequence Type Exemplar sequence
Representative Public ID 1401278 NCBI
Target Description g1401278 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025791(9), U59743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025791 NCBI Caenorhabditis elegans altered AVeRmectin sensitivity family member (avr-14) (avr-14) mRNA, complete cds. 9/11 None
U59743 NCBI Caenorhabditis elegans glutamate-gated chloride channel (GluClX) mRNA, partial cds. 11/11 None
GENEFINDER00000009182 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5975550:5981455:-1 9/11 None
B0207.12a ENSEMBL cdna:known chromosome:CEL140:I:5975380:5981455:-1 gene:B0207.12 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025792 5/11 Cross Hyb Matching Probes None
NM_001025793 7/11 Cross Hyb Matching Probes None
SNAP00000009180 7/11 Cross Hyb Matching Probes None
B0207.12b 5/11 Cross Hyb Matching Probes None
B0207.12c 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172270 3 1 NM_001025791 176660_s_at (11), 194145_x_at (9)
NM_001025792 176660_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5978174-5979532(-) 91.81 91.81
Public Domain and Genome References
Ensembl B0207.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68665 Altered avermectin sensitivity protein 14, isoform a [Caenorhabditis elegans] ref|NP_001020962.1| altered AVeRmectin sensitivity family member (avr-14) [Caenorhabditis elegans] 0.0
blast AAC25481 inhibitory amino acid receptor subunit gbr-2A [Caenorhabditis elegans] 0.0
blast CAE60327 Hypothetical protein CBG03919 [Caenorhabditis briggsae] 0.0
blast C87791 protein B0207.12 [imported] - Caenorhabditis elegans 0.0
blast AAB03402 glutamate-gated chloride channel [Caenorhabditis elegans] 9.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 5.2E-39
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 6.3E-63
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 2.3E-5
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 1.2E-38
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 4.5E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001020962.1 3 253-275,315-337,393-415
AAB03402.1 1 130-152
B0207.12a 3 253-275,315-337,393-415
GENEFINDER00000009182 5 253-275,315-337,424-446,488-510,573-595
Sequence
Target Sequence 
>C. ELEGANS:194145_X_AT
atttgggtgccagacacctacttccaaaatgaaaaggaagcacgacgacacttgatcgac
aaaccaaatgtacttattagaattcataaaaatggacaaatcttgtattcagttcgatta
tcactggtcctttcatgtccaatgtcattggaattctacccattggatcgacaaaactgt
cttattgatttagcatcatacgcatatacaactcaagatatcaaatatgaatggaaagaa
aagaaaccaatccaacaaaaagacggtcttcgtcaatcactcccatctttcgaattacaa
gatgttgtcactgattatgtacttctcttcacaaatacaggcgaatattcatgtctacgt
acccgtatggtcctccgtcgcgagttcagttactacttactacagctgtatattccaagt
ttcatgctcgtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGGGTGCCAGACACCTACTTCC 251 19 13 Antisense
GGAAGCACGACGACACTTGATCGAC 385 531 48 Antisense
GATTATCACTGGTCCTTTCATGTCC 588 429 128 Antisense
GGAATTCTACCCATTGGATCGACAA 223 533 162 Antisense
AAAGACGGTCTTCGTCAATCACTCC 148 123 271 Antisense
TCACTCCCATCTTTCGAATTACAAG 245 627 289 Antisense
CACTGATTATGTACTTCTCTTCACA 70 199 321 Antisense
GAATATTCATGTCTACGTACCCGTA 695 321 355 Antisense
TCCGTCGCGAGTTCAGTTACTACTT 51 591 386 Antisense
GTTACTACTTACTACAGCTGTATAT 498 445 401 Antisense
ATATTCCAAGTTTCATGCTCGTCAT 421 19 422 Antisense
Sequence Source GenBank