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[194144_s_at] ras-related protein

Description g1619846 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 61      6grp_total > 32      4grp_total > 50      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 408.8
(-1.2)
P 		606.2
(3)
P 		548.3
(1.8)
P 		323.2
(-3)
P 		283
B 420.6
(-2.4)
P 		547.7
(3)
P 		527.6
(2.1)
P 		406.4
(-3)
P 		141
C 350
(-2.2)
P 		657.4
(3)
P 		555.6
(1.3)
P 		302.7
(-3)
P 		355
avr 393.1
(-1.9) 		603.8
(3) 		543.8
(1.6) 		344.1
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 444.5
(1.4)
P 		491.2
(3)
P 		469.1
(2.2)
P 		405.1
(0)
P 		408.2
(0.1)
P 		319
(-3)
P 		172
B 532.6
(1.2)
P 		527.2
(1.1)
P 		564.9
(1.7)
P 		642.8
(3)
P 		405.3
(-0.8)
P 		270.5
(-3)
P 		372
C 494.4
(2.5)
P 		513.5
(3)
P 		444.8
(1.4)
P 		418.6
(0.7)
P 		432.6
(1.1)
P 		260.6
(-3)
P 		253
avr 490.5
(2.5) 		510.6
(3) 		492.9
(2.5) 		488.8
(2.4) 		415.4
(0.5) 		283.4
(-3) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 148.8
(3)
P 		131.6
(2)
P 		143.3
(2.7)
P 		47.3
(-3)
P 		102
B 134.1
(2.9)
P 		135.3
(3)
P 		122.2
(1.4)
P 		86.6
(-3)
P 		49
C 115.9
(-0.3)
P 		189
(2.8)
P 		193.7
(3)
P 		51
(-3)
P 		143
avr 132.9
(1.7) 		152
(2.9) 		153.1
(3) 		61.6
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 81.9
(-2.7)
P 		174.7
(3)
P 		102.2
(-1.5)
P 		102.7
(-1.5)
P 		123.2
(-0.2)
P 		77.7
(-3)
P 		97
B 185.3
(3)
P 		175.5
(2.3)
P 		137.2
(-0.4)
P 		170.2
(1.9)
P 		164.7
(1.5)
P 		100.9
(-3)
P 		84
C 183.2
(3)
P 		156.7
(1.4)
P 		113.2
(-1.2)
P 		84.2
(-3)
P 		140
(0.4)
P 		87.3
(-2.8)
P 		99
avr 150.1
(1.6) 		169
(3) 		117.5
(-0.8) 		119
(-0.7) 		142.6
(1) 		88.6
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194144_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28095
Sequence Type Exemplar sequence
Representative Public ID 1619846 NCBI
Target Description g1619846 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078389(11), U68254(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078389 NCBI Caenorhabditis elegans RAB family member (rab-6.2) (rab-6.2) mRNA, complete cds. 11/11 A 
U68254 NCBI Caenorhabditis elegans rab6-like mRNA, partial cds. 11/11 None
SNAP00000027869 ENSEMBL cdna:SNAP chromosome:CEL140:X:17222391:17224086:1 11/11 None
GENEFINDER00000027884 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17222391:17225045:1 11/11 None
T25G12.4 ENSEMBL cdna:known chromosome:CEL140:X:17222387:17224424:1 gene:T25G12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17222384-17222688(+) 86.76 86.76
Public Domain and Genome References
Gene Title ras-related protein
Gene Symbol rab-6.2
Ensembl T25G12.4
Entrez Gene 181759 Entrez gene
SwissProt Q22782 EMBL-EBI
WormBase CE07541 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12489_AT Ras-related GTP-binding protein, putative at
ATH1-121501:263458_AT Ras-related GTP-binding protein, putative at
CANINE:1605534_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE:1604621_S_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE:1588931_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE:1588347_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE_2:CFA.1463.1.S1_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE_2:CFA.14815.1.A1_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE_2:CFA.20401.1.S1_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE_2:CFA.20401.1.S1_S_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE_2:CFAAFFX.9333.1.S1_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
CANINE_2:CFAAFFX.9333.1.S1_S_AT similar to Ras-related protein Rab-6A (Rab-6) cfa
DROSOPHILA_2:1629797_AT Rab-protein 6 dm
DROSGENOME1:143845_AT Rab-protein 6 dm
CHICKEN:GGA.186.1.S1_AT similar to RAB6A, member RAS oncogene family isoform a; Oncogene RAB6; RAB6, member RAS oncogene family; Rab GTPase gga
HG-U133_PLUS_2:201045_S_AT RAB6A, member RAS oncogene family hs
HG-U133A_2:201045_S_AT RAB6A, member RAS oncogene family hs
HG-U133A:201045_S_AT RAB6A, member RAS oncogene family hs
HG-U133_PLUS_2:201048_X_AT RAB6A, member RAS oncogene family hs
HG-U133A:201048_X_AT RAB6A, member RAS oncogene family hs
HG-U133A_2:201048_X_AT RAB6A, member RAS oncogene family hs
HG-U95AV2:622_AT RAB6A, member RAS oncogene family hs
HC-G110:622_AT RAB6A, member RAS oncogene family hs
HG-U133A:201047_X_AT RAB6A, member RAS oncogene family hs
HG-U133_PLUS_2:201047_X_AT RAB6A, member RAS oncogene family hs
HG-U133A_2:201047_X_AT RAB6A, member RAS oncogene family hs
HG-U133_PLUS_2:210406_S_AT RAB6A, member RAS oncogene family hs
HG-U133A:210406_S_AT RAB6A, member RAS oncogene family hs
HG-FOCUS:210406_S_AT RAB6A, member RAS oncogene family hs
HG-U133A_2:210406_S_AT RAB6A, member RAS oncogene family hs
HU35KSUBD:RC_H95393_AT RAB6A, member RAS oncogene family hs
HUGENEFL:M28212_AT RAB6A, member RAS oncogene family hs
U133_X3P:G4506372_3P_A_AT RAB6A, member RAS oncogene family hs
U133_X3P:G12052972_3P_A_AT RAB6A, member RAS oncogene family hs
U133_X3P:HS2.406327.1.S1_3P_X_AT RAB6A, member RAS oncogene family hs
U133_X3P:HS2.406327.1.S1_3P_AT RAB6A, member RAS oncogene family hs
U133_X3P:HS.5636.0.A1_3P_X_AT RAB6A, member RAS oncogene family hs
U133_X3P:HS.5636.0.A1_3P_S_AT RAB6A, member RAS oncogene family hs
U133_X3P:HS.5636.0.A1_3P_AT RAB6A, member RAS oncogene family hs
U133_X3P:HS.5636.0.A1_3P_A_AT RAB6A, member RAS oncogene family hs
U133_X3P:201045_3P_S_AT RAB6A, member RAS oncogene family hs
U133_X3P:1559174_3P_AT RAB6A, member RAS oncogene family hs
HG-U133_PLUS_2:1559174_AT RAB6A, member RAS oncogene family hs
HG-U95AV2:35304_AT RAB6A, member RAS oncogene family hs
HG-U95D:74773_S_AT RAB6A, member RAS oncogene family hs
HG-U133_PLUS_2:1564820_AT RAB6A, member RAS oncogene family hs
HG-U133_PLUS_2:239445_AT RAB6A, member RAS oncogene family hs
HG-U133B:239445_AT RAB6A, member RAS oncogene family hs
HG-U95C:62792_AT RAB6A, member RAS oncogene family hs
HU35KSUBA:H21219_AT RAB6A, member RAS oncogene family hs
HU35KSUBD:RC_AA485970_AT RAB6A, member RAS oncogene family hs
U133_X3P:HS.191718.0.A1_3P_AT RAB6A, member RAS oncogene family hs
MOE430A:1448304_A_AT RAB6, member RAS oncogene family mm
MOUSE430_2:1448304_A_AT RAB6, member RAS oncogene family mm
MOUSE430A_2:1448304_A_AT RAB6, member RAS oncogene family mm
MOE430A:1448305_AT RAB6, member RAS oncogene family mm
MOUSE430A_2:1448305_AT RAB6, member RAS oncogene family mm
MOUSE430_2:1448305_AT RAB6, member RAS oncogene family mm
MOUSE430_2:1447776_X_AT RAB6, member RAS oncogene family mm
MOE430B:1447776_X_AT RAB6, member RAS oncogene family mm
MG-U74AV2:97222_AT RAB6, member RAS oncogene family mm
MG-U74AV2:98927_AT RAB6, member RAS oncogene family mm
MG-U74CV2:168437_I_AT RAB6, member RAS oncogene family mm
MU11KSUBB:MSA.15834.0_S_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
MU11KSUBB:MSA.6251.0_S_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
MU19KSUBA:TC15050_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
MU19KSUBA:TC15224_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
MU19KSUBB:TC34345_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
MU19KSUBC:TC41118_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
MU19KSUBC:TC41118_G_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
MU11KSUBB:W13350_AT RAB6, member RAS oncogene family, mRNA (cDNA clone IMAGE:3491845) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69020 Rab family protein 6.2 [Caenorhabditis elegans] ref|NP_510790.1| RAB family member (rab-6.2) [Caenorhabditis elegans] 1.0E-114
blast CAE69689 Hypothetical protein CBG15944 [Caenorhabditis briggsae] 1.0E-113
blast AAC69020 Rab family protein 6.2 [Caenorhabditis elegans] ref|NP_510790.1| RAB family member (rab-6.2) [Caenorhabditis elegans] 1.0E-111
blast CAE69689 Hypothetical protein CBG15944 [Caenorhabditis briggsae] 1.0E-110
blast EAA13076 ENSANGP00000020507 [Anopheles gambiae str. PEST] ref|XP_317957.1| ENSANGP00000020507 [Anopheles gambiae str. PEST] 5.0E-91
blast EAA13076 ENSANGP00000020507 [Anopheles gambiae str. PEST] ref|XP_317957.1| ENSANGP00000020507 [Anopheles gambiae str. PEST] 4.0E-90
blast AAC69020 Rab family protein 6.2 [Caenorhabditis elegans] ref|NP_510790.1| RAB family member (rab-6.2) [Caenorhabditis elegans] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.4E-87
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 4.5E-25
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.2E-46
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.2E-15
Sequence
Target Sequence 
>C. ELEGANS:194144_S_AT
tgtcggactttggtaatccgttgaagaaattcgagcttgtgttcctcggggaacaaagtg
tcggaaaaacctccctaatcactcgcttcatgtacgactccttcgacaacacctaccagg
ccaccatcggaatcgacttcctgagtaagaccatgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGGACTTTGGTAATCCGTTGAA 9 475 32 Antisense
GACTTTGGTAATCCGTTGAAGAAAT 13 335 37 Antisense
AGCTTGTGTTCCTCGGGGAACAAAG 35 65 65 Antisense
CCCTAATCACTCGCTTCATGTACGA 175 259 104 Antisense
TAATCACTCGCTTCATGTACGACTC 456 635 107 Antisense
TTCATGTACGACTCCTTCGACAACA 146 687 118 Antisense
TCATGTACGACTCCTTCGACAACAC 176 621 119 Antisense
ATCGGAATCGACTTCCTGAGTAAGA 241 35 157 Antisense
GAATCGACTTCCTGAGTAAGACCAT 510 327 161 Antisense
ATCGACTTCCTGAGTAAGACCATGT 213 27 163 Antisense
CGACTTCCTGAGTAAGACCATGTAC 636 251 165 Antisense
Sequence Source GenBank