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[194143_x_at]

Description g4688643 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Cluster 6grp_total > 84      4grp_total > 19      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 4
(-2.7)
A 		2.3
(-3)
A 		15.4
(-0.8)
A 		38.1
(3)
A 		36
B 19
(3)
A 		7.8
(-1.1)
A 		2.8
(-3)
A 		3.3
(-2.8)
A 		16
C 1.8
(-3)
A 		30.2
(3)
A 		3.5
(-2.6)
A 		30.4
(3)
A 		29
avr 8.3
(-2.6) 		13.4
(-0.8) 		7.2
(-3) 		23.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 45.9
(3)
A 		8.1
(-2.6)
A 		26.9
(0.2)
A 		5.3
(-3)
A 		29.9
(0.6)
A 		42.2
(2.5)
A 		41
B 2.1
(-3)
A 		4.6
(-2.6)
A 		18.1
(-0.2)
A 		36.9
(3)
A 		21
(0.3)
A 		2.1
(-3)
A 		35
C 1.6
(-3)
A 		10.3
(3)
A 		5.9
(-0)
A 		4.1
(-1.3)
A 		1.8
(-2.9)
A 		4.5
(-1)
A 		9
avr 16.5
(2.3) 		7.7
(-3) 		17
(2.6) 		15.4
(1.7) 		17.6
(3) 		16.3
(2.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-1.8)
A 		0.5
(-3)
A 		4
(1.1)
A 		5.6
(3)
A 		5
B 6
(3)
A 		1.9
(-1.6)
A 		0.7
(-3)
A 		0.7
(-3)
A 		5
C 0.6
(-3)
A 		8.7
(3)
A 		1.2
(-2.6)
A 		5.1
(0.3)
A 		8
avr 2.7
(-0.7) 		3.7
(2.7) 		2
(-3) 		3.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8.5
(1.8)
A 		2.9
(-1.9)
A 		5.9
(0.1)
A 		1.3
(-3)
A 		9
(2.1)
A 		10.3
(3)
A 		9
B 0.7
(-3)
A 		1.5
(-2.5)
A 		4.4
(-0.6)
A 		9.8
(3)
A 		8.5
(2.1)
A 		0.8
(-2.9)
A 		9
C 0.6
(-3)
A 		3.1
(3)
A 		1.5
(-0.8)
A 		0.8
(-2.5)
A 		0.6
(-3)
A 		1.5
(-0.8)
A 		3
avr 3.3
(-1.6) 		2.5
(-3) 		3.9
(-0.6) 		4
(-0.4) 		6
(3) 		4.2
(-0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194143_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28087
Sequence Type Exemplar sequence
Representative Public ID 4688643 NCBI
Target Description g4688643 /REP_DB=GenBank Identifier /FEA=mRNA Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170960 NCBI Caenorhabditis elegans protein KINase family member (kin-1) (kin-1) mRNA, complete cds. 11/11 A 
ZK909.2g ENSEMBL cdna:known chromosome:CEL140:I:14931083:14959685:1 gene:ZK909.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170958 3/11 Cross Hyb Matching Probes A 
NM_170959 3/11 Cross Hyb Matching Probes A 
NM_170961 7/11 Cross Hyb Matching Probes A 
NM_061205 3/11 Cross Hyb Matching Probes A 
NM_061204 3/11 Cross Hyb Matching Probes A 
NM_170962 3/11 Cross Hyb Matching Probes A 
NM_170963 3/11 Cross Hyb Matching Probes A 
NM_170964 3/11 Cross Hyb Matching Probes A 
NM_170965 3/11 Cross Hyb Matching Probes A 
NM_170967 3/11 Cross Hyb Matching Probes A 
NM_170966 3/11 Cross Hyb Matching Probes A 
ZK909.2h.1 3/11 Cross Hyb Matching Probes None
ZK909.2h.2 3/11 Cross Hyb Matching Probes None
ZK909.2j 3/11 Cross Hyb Matching Probes A 
ZK909.2i 7/11 Cross Hyb Matching Probes A 
ZK909.2b 3/11 Cross Hyb Matching Probes A 
ZK909.2a 3/11 Cross Hyb Matching Probes A 
ZK909.2f 3/11 Cross Hyb Matching Probes A 
ZK909.2k 3/11 Cross Hyb Matching Probes A 
ZK909.2l 3/11 Cross Hyb Matching Probes A 
ZK909.2e 3/11 Cross Hyb Matching Probes A 
ZK909.2d 3/11 Cross Hyb Matching Probes A 
ZK909.2m 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565407 13 1 NM_061205 193173_at (11)
NM_170959 193173_at (11)
NM_170960 194143_x_at (11)
NM_170961 193173_at (11)
NM_170963 193173_at (11)
NM_170965 193173_at (11)
NM_170967 193173_at (11), 194147_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14931013-14949011(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK909.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45618 Hypothetical protein ZK909.2g [Caenorhabditis elegans] emb|CAD45585.1| Hypothetical protein ZK909.2g [Caenorhabditis elegans] ref|NP_740956.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45617 Hypothetical protein ZK909.2f [Caenorhabditis elegans] emb|CAD45584.1| Hypothetical protein ZK909.2f [Caenorhabditis elegans] ref|NP_740958.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
blast CAD45619 Hypothetical protein ZK909.2h [Caenorhabditis elegans] emb|CAD45586.1| Hypothetical protein ZK909.2h [Caenorhabditis elegans] ref|NP_740954.1| protein KINase family member (kin-1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 3.0E-68
hanks 1.1.4 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); EcAPKa 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-89
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 6.1E-6
Sequence
Target Sequence 
>C. ELEGANS:194143_X_AT
aaagctgacgccatgggatccatggtgttcattgtcaaagaattcctggacaaggcacgc
gaagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTGACGCCATGGGATCCATGG 191 123 13 Antisense
GCTGACGCCATGGGATCCATGGTGT 139 297 16 Antisense
GACGCCATGGGATCCATGGTGTTCA 480 381 19 Antisense
CATGGGATCCATGGTGTTCATTGTC 684 209 24 Antisense
ATGGGATCCATGGTGTTCATTGTCA 689 49 25 Antisense
GGGATCCATGGTGTTCATTGTCAAA 644 493 27 Antisense
GGATCCATGGTGTTCATTGTCAAAG 325 513 28 Antisense
GGTGTTCATTGTCAAAGAATTCCTG 695 499 36 Antisense
AAGAATTCCTGGACAAGGCACGCGA 631 151 50 Antisense
GAATTCCTGGACAAGGCACGCGAAG 92 323 52 Antisense
ATTCCTGGACAAGGCACGCGAAGAC 185 9 54 Antisense
Sequence Source GenBank