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[194142_x_at]

Description g746437 /REP_DB=GenBank Identifier /FEA=mRNA Transcript /DEF=bifunctional glyoxylate cycle protein
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 64      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 18      6grp_total > 64      4grp_total > 04      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11201
1 2 3 4 range
A 17601.5
(-0.9)
P 		14547.8
(-2.7)
P 		14119.2
(-3)
P 		24236.5
(3)
P 		10117
B 17143.1
(-0.5)
P 		14717.8
(-3)
P 		14768.3
(-2.9)
P 		20652.1
(3)
P 		5934
C 15747.8
(-1.5)
P 		14751.8
(-2)
P 		13035.7
(-3)
P 		23868.9
(3)
P 		10833
avr 16830.8
(-1.1) 		14672.5
(-2.5) 		13974.4
(-3) 		22919.2
(3) 		8945

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6251
1 2 3 4 5 6 range
A 19437.5
(1.9)
P 		15420.8
(-3)
P 		18075.6
(0.2)
P 		16510.7
(-1.7)
P 		17237.5
(-0.8)
P 		20322.5
(3)
P 		4902
B 16450.6
(0.5)
P 		14405.1
(-2.7)
P 		18071
(3)
P 		17693.7
(2.4)
P 		14225.8
(-3)
P 		17018.6
(1.4)
P 		3845
C 14071.7
(-3)
P 		14774
(-2)
P 		18094.2
(3)
P 		17060.5
(1.5)
P 		15266.6
(-1.2)
P 		15840.2
(-0.4)
P 		4023
avr 16653.3
(0.3) 		14866.6
(-3) 		18080.3
(3) 		17088.3
(1.1) 		15576.6
(-1.7) 		17727.1
(2.3) 		3214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3251
1 2 3 4 range
A 6408.7
(3)
P 		3157.9
(-3)
P 		3691
(-2)
P 		3547.7
(-2.3)
P 		3251
B 5466.8
(3)
P 		3634.9
(-2.4)
P 		3422.1
(-3)
P 		4401
(-0.1)
P 		2045
C 5213
(3)
P 		4241.2
(-1.9)
P 		4543.3
(-0.4)
P 		4024.7
(-3)
P 		1188
avr 5696.2
(3) 		3678
(-3) 		3885.5
(-2.4) 		3991.1
(-2.1) 		2018

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2915
1 2 3 4 5 6 range
A 3583.1
(-3)
P 		5484.4
(3)
P 		3936.5
(-1.9)
P 		4187.5
(-1.1)
P 		5201.5
(2.1)
P 		4947.9
(1.3)
P 		1901
B 5724
(1.1)
P 		4794.9
(-1.8)
P 		4388.2
(-3)
P 		4686.5
(-2.1)
P 		5779.8
(1.3)
P 		6346.2
(3)
P 		1958
C 5215.8
(2.7)
P 		4508
(0.5)
P 		4605.3
(0.8)
P 		3430.9
(-3)
P 		4940
(1.8)
P 		5302.6
(3)
P 		1872
avr 4841
(0.1) 		4929.1
(0.5) 		4310
(-2.1) 		4101.6
(-3) 		5307.1
(2.1) 		5532.2
(3) 		1431
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194142_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28081
Sequence Type Exemplar sequence
Representative Public ID 746437 NCBI
Target Description g746437 /REP_DB=GenBank Identifier /FEA=mRNA Transcript /DEF=bifunctional glyoxylate cycle protein
Cluster Evidence This cluster is supported by a mRNA.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070905(11), NM_001026196(11), U23159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070905 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-7) (gei-7) mRNA, complete cds. 11/11 A 
NM_001026196 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-7) (gei-7) mRNA, complete cds. 11/11 None
U23159 NCBI Caenorhabditis elegans bifunctional glyoxylate cycle protein, complete cds. 11/11 A 
C05E4.9a.3 ENSEMBL cdna:known chromosome:CEL140:V:724037:727787:-1 gene:C05E4.9 11/11 A 
C05E4.9a.4 ENSEMBL cdna:known chromosome:CEL140:V:724040:727787:-1 gene:C05E4.9 11/11 A 
C05E4.9b.1 ENSEMBL cdna:known chromosome:CEL140:V:724040:727933:-1 gene:C05E4.9 11/11 A 
C05E4.9b.2 ENSEMBL cdna:known chromosome:CEL140:V:724040:728027:-1 gene:C05E4.9 11/11 A 
C05E4.9a.2 ENSEMBL cdna:known chromosome:CEL140:V:724101:727787:-1 gene:C05E4.9 11/11 A 
C05E4.9a.1 ENSEMBL cdna:known chromosome:CEL140:V:724154:727811:-1 gene:C05E4.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009755 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009773 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:724153-727811(-) 93.92 93.92
Public Domain and Genome References
Ensembl C05E4.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71278 Gex interacting protein protein 7, isoform a [Caenorhabditis elegans] ref|NP_503306.1| GEX Interacting protein family member (gei-7) [Caenorhabditis elegans] sp|Q10663|GCP_CAEEL Bifunctional glyoxylate cycle protein (GEX interacting protein 7) [Includes: Isocitrate lyase (Isocitrase) (Isocitratase) (ICL); Malate synthase ] 0.0
blast AAA85857 bifunctional glyoxylate cycle protein 0.0
blast AAN84883 Gex interacting protein protein 7, isoform b [Caenorhabditis elegans] ref|NP_001021367.1| GEX Interacting protein family member (gei-7) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR001465 EMBL-EBI Malate synthase 1.0E-126
Pfam IPR001465 EMBL-EBI Malate synthase 1.0E-126
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR001465 EMBL-EBI Malate synthase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:194142_X_AT
gaagacctcactgtgatcccagagggaacccgcactgaagctggattccgccataatatc
tctgtaactcttggatacctcgactcttggctcagaggaaccggatgcgtgccactctac
aacttgatggaggacgctgccaccgccgaaatctcgcgtgctcagctctggcaatggctc
catcatgatgctaagcttgaggacggtcgcactattgacgccggacttgtcaagcaaacg
attgccgccgagaccgagcgtcgtctcatccgagccggatcagttgtcaaccgaatccca
gaggctgccgacttgctcgagaagtttgtcaccgaggagaagatgagcgacttcttgacc
gaccgacgcttacgacaggcttgtctctgaaggatattaggaaatttttttaaatttgaa
ttacttatttgtatacttctctccatgattttcgttgcacctactggttttcttgtacat
tctgccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACCTCACTGTGATCCCAGAGG 456 339 2736 Antisense
GGAACCCGCACTGAAGCTGGATTCC 279 531 2760 Antisense
GGATTCCGCCATAATATCTCTGTAA 376 509 2778 Antisense
ATACCTCGACTCTTGGCTCAGAGGA 16 23 2810 Antisense
CTCAGAGGAACCGGATGCGTGCCAC 439 229 2826 Antisense
GCGTGCCACTCTACAACTTGATGGA 173 293 2842 Antisense
AGTTGTCAACCGAATCCCAGAGGCT 109 63 3017 Antisense
CGACGCTTACGACAGGCTTGTCTCT 608 249 3099 Antisense
GTATACTTCTCTCCATGATTTTCGT 575 453 3166 Antisense
TTTCGTTGCACCTACTGGTTTTCTT 184 671 3185 Antisense
TGGTTTTCTTGTACATTCTGCCGTT 362 551 3200 Antisense
Sequence Source GenBank