[Home] | [Total List]

[194135_at] DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 5 (EC 1.14.13.8) (HEPATIC FLAVIN-CONTAINING MONOOXYGENASE 5) (FMO 5) (DIMETHYLANILINE OXIDA ..

Description Y39A1A.19 /REP_DB=WormBase Gene ID /WP=CE19139 /TR=Q9NAI6 /GB=CAB97238.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 5 (EC 1.14.13.8) (HEPATIC FLAVIN-CONTAINING MONOOXYGENASE 5) (FMO 5) (DIMETHYLANILINE OXIDA ..
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 97      6grp_total > 76      4grp_total > 61      6grp_highest_sub > In      6grp_cgc > 57      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 329.7
(2.4)
P 		350.2
(3)
P 		341.7
(2.8)
P 		138.4
(-3)
P 		212
B 424.4
(3)
P 		276.1
(-2.3)
P 		356.7
(0.6)
P 		255.6
(-3)
P 		169
C 386.4
(0.6)
P 		319.9
(-1.1)
P 		474.8
(3)
P 		249.2
(-3)
P 		226
avr 380.2
(2.6) 		315.4
(0.4) 		391.1
(3) 		214.4
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1397
1 2 3 4 5 6 range
A 652.6
(-2.3)
P 		528.6
(-3)
P 		1203.5
(1)
P 		1082.9
(0.3)
P 		782
(-1.5)
P 		1543.5
(3)
P 		1015
B 643.3
(-3)
P 		703.7
(-2.7)
P 		1423.8
(1.1)
P 		765.1
(-2.4)
P 		1246.9
(0.1)
P 		1798.5
(3)
P 		1155
C 625
(-3)
P 		699.1
(-2.7)
P 		991.3
(-1.3)
P 		851.1
(-2)
P 		979.9
(-1.4)
P 		1925.2
(3)
P 		1300
avr 640.3
(-3) 		643.8
(-3) 		1206.2
(0) 		899.7
(-1.6) 		1002.9
(-1) 		1755.7
(3) 		1115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 120.1
(3)
P 		76
(0.3)
P 		89.3
(1.1)
P 		20.3
(-3)
P 		100
B 135.3
(3)
P 		68.2
(-2)
P 		82.6
(-0.9)
P 		54.5
(-3)
P 		81
C 127.9
(1.2)
P 		92
(-0.6)
P 		165.5
(3)
P 		42
(-3)
P 		124
avr 127.8
(3) 		78.7
(-0.3) 		112.5
(2) 		38.9
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 550
1 2 3 4 5 6 range
A 120.3
(-3)
P 		188
(-1.4)
P 		262.1
(0.3)
P 		274.7
(0.6)
P 		236
(-0.3)
P 		375.8
(3)
P 		256
B 223.8
(-2.7)
P 		234.2
(-2.6)
P 		345.8
(-1.2)
P 		202.6
(-3)
P 		506.6
(0.9)
P 		670.6
(3)
P 		468
C 231.7
(-2.2)
P 		213.3
(-2.5)
P 		252.3
(-2)
P 		171.2
(-3)
P 		317.1
(-1.2)
P 		644.5
(3)
P 		473
avr 191.9
(-3) 		211.8
(-2.7) 		286.7
(-1.5) 		216.2
(-2.6) 		353.2
(-0.4) 		563.6
(3) 		372
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6545
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.19 NCBI
Target Description Y39A1A.19 /REP_DB=WormBase Gene ID /WP=CE19139 /TR=Q9NAI6 /GB=CAB97238.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 5 (EC 1.14.13.8) (HEPATIC FLAVIN-CONTAINING MONOOXYGENASE 5) (FMO 5) (DIMETHYLANILINE OXIDA ..
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066955 NCBI Caenorhabditis elegans Flavin-containing MonoOxygenase family member (fmo-3) (fmo-3) mRNA, complete cds. 11/11 None
SNAP00000012926 ENSEMBL cdna:SNAP chromosome:CEL140:III:10694571:10702408:1 11/11 None
GENEFINDER00000012948 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10694571:10698668:1 11/11 None
Y39A1A.19 ENSEMBL cdna:known chromosome:CEL140:III:10694537:10698738:1 gene:Y39A1A.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10694566-10698664(+) 100.0 100.0
Public Domain and Genome References
Gene Title DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 5 (EC 1.14.13.8) (HEPATIC FLAVIN-CONTAINING MONOOXYGENASE 5) (FMO 5) (DIMETHYLANILINE OXIDA ..
Gene Symbol fmo-3
Ensembl Y39A1A.19
Entrez Gene 176491 Entrez gene
SwissProt Q9NAI6 EMBL-EBI
WormBase CE19139 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260994_AT flavin-containing monooxygenase family protein / FMO family protein at
CANINE:1587250_AT similar to flavin containing monooxygenase 5 cfa
CANINE_2:CFA.6512.1.A1_AT similar to flavin containing monooxygenase 5 cfa
CANINE_2:CFA.6512.1.A1_S_AT similar to flavin containing monooxygenase 5 cfa
CANINE_2:CFAAFFX.20866.1.S1_AT similar to flavin containing monooxygenase 5 cfa
DROSOPHILA_2:1626953_AT Flavin-containing monooxygenase 1 dm
DROSGENOME1:152939_AT Flavin-containing monooxygenase 1 dm
CHICKEN:GGAAFFX.1919.1.S1_S_AT similar to Dimethylaniline monooxygenase [N-oxide forming] 5 (Hepatic flavin-containing monooxygenase 5) (FMO 5) (Dimethylaniline oxidase 5) gga
CHICKEN:GGAAFFX.1919.2.S1_AT similar to Dimethylaniline monooxygenase [N-oxide forming] 5 (Hepatic flavin-containing monooxygenase 5) (FMO 5) (Dimethylaniline oxidase 5) gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5792 microsome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
4499 dimethylaniline monooxygenase (N-oxide-forming) activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB97238 Hypothetical protein Y39A1A.19 [Caenorhabditis elegans] ref|NP_499356.1| Flavin-containing MonoOxygenase family member (fmo-3) [Caenorhabditis elegans] emb|CAE46542.1| flavin monooxygenase [Caenorhabditis elegans] 0.0
blast AAF39901 Flavin-containing monooxygenase family protein 5 [Caenorhabditis elegans] ref|NP_503352.1| Flavin-containing MonoOxygenase family member (fmo-5) [Caenorhabditis elegans] emb|CAE46543.1| flavin monooxygenase [Caenorhabditis elegans] 0.0
blast CAE71419 Hypothetical protein CBG18329 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000960 EMBL-EBI Flavin-containing monooxygenase FMO 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:194135_AT
acagagacttctatccattttgaggatggaacttttgtagaaaatgtggacgaagtgatt
ctagcaactggattttcatttcatttcaatttaatcgaaaatggaaatttggtaaaagtg
gatgagaataagacggatgcatttaaatatatgtttccaatggctacagctgataagaat
actttagcagtgattggtttggttcaagtaattggatcaattatgccaattagtgaaatg
caggcgagagtctatttggaatcttttgctgctggaagagaattgccgagtaaagaggag
atgttccacaacgtaattgccaagcgtcaacaaatggcgaatcggtacgtggaaagccgt
cggcacacgattcaagtcgatttcctaccgtacctccatgaactcggtgctctaattggt
tgtaatccagatatgaaggctctttggatgaagaatccattgcttgcttggagagtttat
tttggtccttgtgttccatatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGAGACTTCTATCCATTTTGAGG 549 105 940 Antisense
TAGCAACTGGATTTTCATTTCATTT 288 651 1001 Antisense
ATATGTTTCCAATGGCTACAGCTGA 113 19 1088 Antisense
GTCTATTTGGAATCTTTTGCTGCTG 570 469 1189 Antisense
GGAGATGTTCCACAACGTAATTGCC 332 517 1236 Antisense
GGTACGTGGAAAGCCGTCGGCACAC 306 505 1283 Antisense
GATTCAAGTCGATTTCCTACCGTAC 532 427 1308 Antisense
CTACCGTACCTCCATGAACTCGGTG 44 227 1324 Antisense
GAACTCGGTGCTCTAATTGGTTGTA 249 347 1339 Antisense
GGATGAAGAATCCATTGCTTGCTTG 666 513 1385 Antisense
ATTTTGGTCCTTGTGTTCCATATGT 449 13 1418 Antisense
Sequence Source Affymetrix Proprietary Database