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[194119_at]

Description H13N06.4 /REP_DB=WormBase Gene ID /WP=CE18814 /TR=Q9XTQ8 /GB=CAB17069.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Heme-binding domain in cytochrome b5 and oxidoreductases, Oxidoreductase molybdopterin binding domain
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 40      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 81      6grp_total > 40      4grp_total > 48      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 242
(-3)
P 		338.3
(-0.5)
P 		473.2
(3)
P 		256.2
(-2.6)
P 		231
B 164.3
(-3)
P 		455.3
(3)
P 		457.3
(3)
P 		251
(-1.2)
P 		293
C 241.9
(-3)
P 		354.3
(-0.3)
P 		495.7
(3)
P 		264.8
(-2.5)
P 		254
avr 216.1
(-3) 		382.6
(0.9) 		475.4
(3) 		257.3
(-2) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 232.6
(-1.9)
P 		321.4
(1.2)
P 		291.3
(0.2)
P 		371.4
(3)
P 		200.9
(-3)
P 		263.6
(-0.8)
P 		171
B 251.2
(-0.7)
P 		265.4
(0.1)
P 		319.7
(3)
P 		276.7
(0.7)
P 		213.6
(-2.7)
P 		207.5
(-3)
P 		112
C 318.3
(1.4)
P 		296.2
(0.3)
P 		350.9
(3)
P 		238.5
(-2.6)
P 		236.7
(-2.7)
P 		229.8
(-3)
P 		121
avr 267.4
(-0.1) 		294.3
(1.5) 		320.6
(3) 		295.5
(1.5) 		217.1
(-3) 		233.6
(-2) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 88.1
(0.5)
P 		73.4
(-0.5)
P 		123.7
(3)
P 		37.5
(-3)
P 		86
B 52.4
(-3)
P 		112.5
(3)
P 		106
(2.4)
P 		53.5
(-2.9)
P 		60
C 80.1
(-1.3)
P 		101.9
(-0.3)
P 		172.8
(3)
P 		44.6
(-3)
P 		128
avr 73.5
(-1.1) 		95.9
(0.4) 		134.2
(3) 		45.2
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 42.9
(-3)
P 		114.3
(3)
P 		63.4
(-1.3)
P 		94.2
(1.3)
P 		60.6
(-1.5)
P 		64.2
(-1.2)
P 		71
B 87.4
(2.6)
P 		88.4
(3)
P 		77.6
(-1.3)
P 		73.3
(-3)
P 		86.8
(2.4)
P 		77.4
(-1.4)
P 		15
C 118
(3)
P 		90.4
(0.6)
P 		89.3
(0.5)
P 		48
(-3)
P 		76.6
(-0.5)
P 		76.9
(-0.5)
P 		70
avr 82.8
(-0.5) 		97.7
(3) 		76.8
(-1.8) 		71.8
(-3) 		74.7
(-2.3) 		72.8
(-2.8) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17971
Sequence Type Exemplar sequence
Representative Public ID H13N06.4 NCBI
Target Description H13N06.4 /REP_DB=WormBase Gene ID /WP=CE18814 /TR=Q9XTQ8 /GB=CAB17069.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Heme-binding domain in cytochrome b5 and oxidoreductases, Oxidoreductase molybdopterin binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029564 NCBI Caenorhabditis elegans H13N06.4a (H13N06.4) mRNA, complete cds. 11/11 None
SNAP00000006579 ENSEMBL cdna:SNAP chromosome:CEL140:X:15497474:15500001:1 11/11 None
GENEFINDER00000006586 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15497474:15500001:1 11/11 None
H13N06.4 ENSEMBL cdna:known chromosome:CEL140:X:15497473:15500135:1 gene:H13N06.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181638 2 1 NM_001029564 194119_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15497473-15500001(+) 100.0 100.0
Public Domain and Genome References
Ensembl H13N06.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB17069 Hypothetical protein H13N06.4a [Caenorhabditis elegans] ref|NP_001024735.1| H13N06.4a [Caenorhabditis elegans] 0.0
blast CAE63322 Hypothetical protein CBG07713 [Caenorhabditis briggsae] 0.0
blast AAH77584 Unknown (protein for MGC:83835) [Xenopus laevis] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR005066 EMBL-EBI Mo-co oxidoreductase dimerisation domain 5.4E-66
Pfam IPR000572 EMBL-EBI Oxidoreductase, molybdopterin binding 8.1E-100
Pfam IPR001199 EMBL-EBI Cytochrome b5 1.6E-18
Sequence
Target Sequence 
>C. ELEGANS:194119_AT
gatgaagtcattgtcgcttatcacatgaatggagttgatattccgagggatcacggagct
cctctgcgggtcattgtgccaggtaatgttggtgctcgacaagtgaaatggctcagaaaa
attattgttagtgagaaggaaagtgatagtcattggcagcaaaaagattatagagcattc
tccccagctgtcaacattggtgacgagctgaagtggaacacagttccatctatccaagag
tatcctgttcaatgtgcaatctgtagtccggctccaaataccaaagttgatcgtggtgac
gaaactgtggacatctctggatatgcgtggagcggtggtggccgtggaatcatccgaatc
gaggttagcgtcgatggtggcgagacgtggaacagtgtcgagatggagcaagaagagaag
caggatcaggagcacatgtacgcatggacattgttcaaggcagaagtgaaaattcctccg
ggagtcaaggagttcaatattattgcgaaagcagtagacagagcctataacacgcaacca
gagactgccagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAAGTCATTGTCGCTTATCACA 655 411 1018 Antisense
TTCCGAGGGATCACGGAGCTCCTCT 535 699 1058 Antisense
CTCTGCGGGTCATTGTGCCAGGTAA 626 231 1079 Antisense
AGATTATAGAGCATTCTCCCCAGCT 286 65 1182 Antisense
GGAACACAGTTCCATCTATCCAAGA 112 529 1232 Antisense
GAGTATCCTGTTCAATGTGCAATCT 445 399 1255 Antisense
TGTAGTCCGGCTCCAAATACCAAAG 27 557 1279 Antisense
GGATATGCGTGGAGCGGTGGTGGCC 276 507 1336 Antisense
GTGGCCGTGGAATCATCCGAATCGA 383 491 1355 Antisense
GACAGAGCCTATAACACGCAACCAG 292 369 1534 Antisense
ACACGCAACCAGAGACTGCCAGTGG 541 109 1547 Antisense
Sequence Source Affymetrix Proprietary Database