[Home] | [Total List]

[194114_s_at] WAP-type (Whey Acidic Protein) 'four-disulfide core', Fibronectin type III domain (3 domains)

Description K03D10.1 /REP_DB=WormBase Gene ID /WP=CE18005 /GEN=kal-1 /TR=O62299 /GB=CAB04551.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WAP-type (Whey Acidic Protein) four-disulfide core, Fibronectin type III domain (3 domains)
Cluster 6grp_high1_10_10 > 17      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_total > 06      4grp_total > 45      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 499.4
(3)
P 		349.2
(-0.1)
P 		211.8
(-3)
P 		215.2
(-2.9)
P 		288
B 517.5
(3)
P 		415.3
(1)
P 		226.3
(-2.7)
P 		210.3
(-3)
P 		307
C 574.8
(3)
P 		402.1
(0.2)
P 		234.6
(-2.5)
P 		201.9
(-3)
P 		373
avr 530.6
(3) 		388.9
(0.4) 		224.2
(-2.7) 		209.1
(-3) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 620
1 2 3 4 5 6 range
A 752.3
(3)
P 		515.1
(0.3)
P 		260.7
(-2.7)
P 		233
(-3)
P 		244.9
(-2.9)
P 		272.7
(-2.5)
P 		519
B 769.6
(3)
P 		415.7
(-0.8)
P 		327
(-1.8)
P 		223.2
(-2.9)
P 		222.5
(-2.9)
P 		213.5
(-3)
P 		556
C 762.3
(3)
P 		382.2
(-0.7)
P 		294.9
(-1.6)
P 		217
(-2.3)
A 		272.1
(-1.8)
P 		150
(-3)
P 		612
avr 761.4
(3) 		437.7
(-0.5) 		294.2
(-2.1) 		224.4
(-2.9) 		246.5
(-2.6) 		212.1
(-3) 		549
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 181.8
(3)
P 		75.8
(-1.2)
P 		55.4
(-2)
P 		31.5
(-3)
P 		150
B 165
(3)
P 		102.6
(-0.1)
P 		52.4
(-2.6)
P 		44.8
(-3)
P 		120
C 190.3
(3)
P 		115.6
(0.1)
P 		81.8
(-1.2)
P 		34.1
(-3)
P 		156
avr 179
(3) 		98
(-0.4) 		63.2
(-1.9) 		36.8
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 138.7
(0.9)
P 		183.2
(3)
P 		56.8
(-3)
P 		59.1
(-2.9)
P 		73.9
(-2.2)
P 		66.4
(-2.5)
P 		126
B 267.8
(3)
P 		138.4
(-0.7)
P 		79.4
(-2.4)
P 		59.1
(-3)
P 		90.4
(-2.1)
P 		79.6
(-2.4)
P 		209
C 282.6
(3)
P 		116.6
(-1.2)
P 		75.1
(-2.2)
P 		43.6
(-3)
A 		88.1
(-1.9)
P 		50.2
(-2.8)
P 		239
avr 229.7
(3) 		146.1
(0.1) 		70.4
(-2.4) 		53.9
(-3) 		84.1
(-2) 		65.4
(-2.6) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194114_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.537
Sequence Type Exemplar sequence
Representative Public ID K03D10.1 NCBI
Target Description K03D10.1 /REP_DB=WormBase Gene ID /WP=CE18005 /GEN=kal-1 /TR=O62299 /GB=CAB04551.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WAP-type (Whey Acidic Protein) four-disulfide core, Fibronectin type III domain (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061067 NCBI Caenorhabditis elegans human KALlmann syndrome homolog family member (kal-1) (kal-1) mRNA, complete cds. 11/11 None
GENEFINDER00000042298 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14135643:14143183:-1 11/11 None
SNAP00000042295 ENSEMBL cdna:SNAP chromosome:CEL140:I:14136919:14144912:-1 11/11 None
K03D10.1 ENSEMBL cdna:known chromosome:CEL140:I:14136707:14150322:-1 gene:K03D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14136849-14143114(-) 100.0 100.0
Public Domain and Genome References
Gene Title WAP-type (Whey Acidic Protein) 'four-disulfide core', Fibronectin type III domain (3 domains)
Gene Symbol kal-1
Ensembl K03D10.1
Entrez Gene 173282 Entrez gene
SwissProt O62299 EMBL-EBI
WormBase CE35892 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17648.1.S1_AT similar to Anosmin 1 precursor (Kallmann syndrome protein) (Adhesion molecule-like X-linked) cfa
DROSGENOME1:151976_AT dm
DROSOPHILA_2:1628493_AT dm
CHICKEN:GGA.796.1.S1_AT Kallmann syndrome 1 sequence gga
HG-U95AV2:33158_AT Kallmann syndrome 1 sequence hs
HU35KSUBA:M97252_AT Kallmann syndrome 1 sequence hs
HUGENEFL:M97252_AT Kallmann syndrome 1 sequence hs
HU35KSUBC:RC_H17883_S_AT Kallmann syndrome 1 sequence hs
HUGENEFL:X60299_S_AT Kallmann syndrome 1 sequence hs
HG-U133A:205206_AT Kallmann syndrome 1 sequence hs
HG-U133_PLUS_2:205206_AT Kallmann syndrome 1 sequence hs
HG-FOCUS:205206_AT Kallmann syndrome 1 sequence hs
HG-U133A_2:205206_AT Kallmann syndrome 1 sequence hs
U133_X3P:G4557682_3P_AT Kallmann syndrome 1 sequence hs
U133_X3P:HS.283905.0.S1_3P_S_AT Kallmann syndrome 1 sequence hs
HG-U133_PLUS_2:229853_AT Kallmann syndrome 1 sequence hs
HG-U133B:229853_AT Kallmann syndrome 1 sequence hs
U133_X3P:HS.89591.1.A1_3P_AT Kallmann syndrome 1 sequence hs
Protein Similarities
Method ID Description E-Value
blast CAE48500 Hypothetical protein K03D10.1 [Caenorhabditis elegans] emb|CAB04551.2| Hypothetical protein K03D10.1 [Caenorhabditis elegans] ref|NP_493468.2| human KALlmann syndrome homolog family member (kal-1) [Caenorhabditis elegans] 0.0
blast AAL73338 KAL-1 [Caenorhabditis elegans] 0.0
blast CAE71807 Hypothetical protein CBG18819 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.7E-5
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.2E-15
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.7E-5
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 9.9E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.7E-5
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.2E-15
Sequence
Target Sequence 
>C. ELEGANS:194114_S_AT
gacctccgagtcacagactgctcggcgctccttaaaggcctaagctttgactgtgactat
aaagtcgaggtgactgacaccctaaccggagactttgtagtggatggggtgttttctacg
gatacatgcgatcagacgtcttccctgacaccgattgactgttccagtgtgactacgccg
attcagtgccaggtgacaagtgaatctagtgcacactgtcattggacccgccatcatgat
gctatgcagacggtgattgggtatcgaattttgttgagttccccgatcaatcatgatacc
aatactacgatcaatcagccacagctcagggaggttcgctatgagaatttggcgccagga
tatgtgtatactgttgaggttcaaagtattacaaataaaggattgggacgtacggttagc
actcaatttgtgacacatccggatttggattcaaatgcgatacagagattccccggagga
gaaattatcgagctgccactggaatcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTCCGAGTCACAGACTGCTCGG 148 383 1426 Antisense
AGGCCTAAGCTTTGACTGTGACTAT 679 53 1461 Antisense
GACACCCTAACCGGAGACTTTGTAG 363 367 1501 Antisense
GATACATGCGATCAGACGTCTTCCC 441 421 1546 Antisense
CCTGACACCGATTGACTGTTCCAGT 199 265 1569 Antisense
TCTAGTGCACACTGTCATTGGACCC 431 611 1630 Antisense
ATTGGACCCGCCATCATGATGCTAT 487 3 1646 Antisense
CAGCCACAGCTCAGGGAGGTTCGCT 394 203 1741 Antisense
GGGACGTACGGTTAGCACTCAATTT 265 493 1830 Antisense
TGCGATACAGAGATTCCCCGGAGGA 122 583 1881 Antisense
TATCGAGCTGCCACTGGAATCTTCC 662 657 1911 Antisense
Sequence Source Affymetrix Proprietary Database