[Home] | [Total List]

[194111_at] ADP-ribosylation factors (Arf family) (contains ATP/GTP binding P-loop), Zinc finger, C3HC4 type (RING finger)

Description ZK1320.6 /REP_DB=WormBase Gene ID /WP=CE01704 /TR=Q09654 /GB=CAA87044.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ADP-ribosylation factors (Arf family) (contains ATP-GTP binding P-loop), Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 60      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 429.1
(3)
P 		288
(-1.8)
P 		317.4
(-0.8)
P 		253.7
(-3)
P 		175
B 382.8
(1.5)
P 		433.9
(3)
P 		231.6
(-2.9)
P 		227.2
(-3)
P 		207
C 374.9
(3)
P 		253.7
(-1.1)
P 		302.5
(0.6)
P 		195.5
(-3)
P 		179
avr 395.6
(3) 		325.2
(0.5) 		283.8
(-0.9) 		225.5
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 534.5
(3)
P 		435.4
(1.1)
P 		330.2
(-0.9)
P 		275.8
(-2)
P 		253.3
(-2.4)
P 		222.2
(-3)
P 		312
B 506.6
(3)
P 		461.1
(1.8)
P 		407.5
(0.5)
P 		433.1
(1.1)
P 		271.1
(-3)
P 		269.4
(-3)
P 		237
C 421
(0.3)
P 		533.1
(3)
P 		438.6
(0.7)
P 		355.5
(-1.3)
P 		295.7
(-2.7)
P 		284.6
(-3)
P 		249
avr 487.4
(3) 		476.5
(2.7) 		392.1
(0.5) 		354.8
(-0.5) 		273.4
(-2.6) 		258.7
(-3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 156.2
(3)
P 		62.5
(-1.7)
P 		83
(-0.7)
P 		37.1
(-3)
P 		119
B 122.1
(3)
P 		107.2
(1.8)
P 		53.7
(-2.6)
P 		48.4
(-3)
P 		74
C 124.1
(3)
P 		72.9
(-0.4)
P 		105.4
(1.8)
P 		33
(-3)
P 		91
avr 134.1
(3) 		80.9
(-0.4) 		80.7
(-0.4) 		39.5
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 98.5
(-0.4)
P 		154.8
(3)
P 		71.9
(-1.9)
P 		69.9
(-2.1)
P 		76.4
(-1.7)
P 		54.1
(-3)
P 		101
B 176.3
(3)
P 		153.5
(1.2)
P 		99
(-3)
P 		114.7
(-1.8)
P 		110.1
(-2.1)
P 		100.4
(-2.9)
P 		77
C 156.1
(2.6)
P 		162.7
(3)
P 		111.6
(-0.4)
P 		71.5
(-3)
P 		95.7
(-1.4)
P 		95.3
(-1.4)
P 		91
avr 143.6
(1.9) 		157
(3) 		94.2
(-2.1) 		85.4
(-2.8) 		94.1
(-2.1) 		83.3
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3390
Sequence Type Exemplar sequence
Representative Public ID ZK1320.6 NCBI
Target Description ZK1320.6 /REP_DB=WormBase Gene ID /WP=CE01704 /TR=Q09654 /GB=CAA87044.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ADP-ribosylation factors (Arf family) (contains ATP-GTP binding P-loop), Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063688 NCBI Caenorhabditis elegans ARF-related in C-term (ARD family) family member (arc-1) (arc-1) mRNA, complete cds. 11/11 None
SNAP00000038588 ENSEMBL cdna:SNAP chromosome:CEL140:II:9674892:9677034:1 11/11 None
GENEFINDER00000038599 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9674892:9677034:1 11/11 None
ZK1320.6 ENSEMBL cdna:known chromosome:CEL140:II:9674889:9677114:1 gene:ZK1320.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9674876-9677031(+) 100.0 100.0
Public Domain and Genome References
Gene Title ADP-ribosylation factors (Arf family) (contains ATP/GTP binding P-loop), Zinc finger, C3HC4 type (RING finger)
Gene Symbol arc-1
Ensembl ZK1320.6
Entrez Gene 174525 Entrez gene
SwissProt Q09654 EMBL-EBI
WormBase CE37598 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17537.1.S1_AT similar to GTP-binding protein ARD-1 (ADP-ribosylation factor domain protein 1) (Tripartite motif protein 23) cfa
CANINE_2:CFA.17537.1.S1_S_AT similar to GTP-binding protein ARD-1 (ADP-ribosylation factor domain protein 1) (Tripartite motif protein 23) cfa
CHICKEN:GGA.12603.1.S1_AT tripartite motif-containing 23 gga
HG-U133_PLUS_2:210994_X_AT tripartite motif-containing 23 hs
HG-U133A:210994_X_AT tripartite motif-containing 23 hs
HG-U133A_2:210994_X_AT tripartite motif-containing 23 hs
HG-U133_PLUS_2:210995_S_AT tripartite motif-containing 23 hs
HG-U133A:210995_S_AT tripartite motif-containing 23 hs
HG-U133A_2:210995_S_AT tripartite motif-containing 23 hs
HUGENEFL:L04510_AT tripartite motif-containing 23 hs
U133_X3P:G12275884_3P_A_AT tripartite motif-containing 23 hs
U133_X3P:HS.792.0.S1_3P_A_AT tripartite motif-containing 23 hs
HG-U133A_2:204732_S_AT tripartite motif-containing 23 hs
HG-FOCUS:204732_S_AT tripartite motif-containing 23 hs
HG-U133_PLUS_2:204732_S_AT tripartite motif-containing 23 hs
HG-U133A:204732_S_AT tripartite motif-containing 23 hs
HG-U95AV2:37537_AT tripartite motif-containing 23 hs
HG-U95E:88157_AT tripartite motif-containing 23 hs
MG-U74BV2:163835_R_AT tripartite motif protein 23 mm
MG-U74BV2:163698_AT tripartite motif protein 23 mm
MG-U74CV2:167474_AT tripartite motif protein 23 mm
MG-U74CV2:170399_AT tripartite motif protein 23 mm
MOE430A:1426969_AT tripartite motif protein 23 mm
MOUSE430A_2:1426969_AT tripartite motif protein 23 mm
MOUSE430_2:1426969_AT tripartite motif protein 23 mm
MOE430B:1429998_AT tripartite motif protein 23 mm
MOUSE430_2:1429998_AT tripartite motif protein 23 mm
MOE430B:1456089_AT tripartite motif protein 23 mm
MOUSE430_2:1456089_AT tripartite motif protein 23 mm
RG-U34A:L04760_AT tripartite motif protein 23 rn
RAE230A:1371060_AT tripartite motif protein 23 rn
RAT230_2:1371060_AT tripartite motif protein 23 rn
RAE230B:1392524_AT tripartite motif protein 23 rn
RAT230_2:1392524_AT tripartite motif protein 23 rn
RG-U34C:RC_AI234031_AT Tripartite motif protein 23 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87044 Hypothetical protein ZK1320.6 [Caenorhabditis elegans] ref|NP_496089.3| ARF-related in C-term (ARD family) family member (arc-1) [Caenorhabditis elegans] sp|Q09654|ARD1_CAEEL Putative GTP-binding protein ard-1 homolog 0.0
blast CAE57996 Hypothetical protein CBG01059 [Caenorhabditis briggsae] 0.0
blast XP_544360 PREDICTED: similar to GTP-binding protein ARD-1 (ADP-ribosylation factor domain protein 1) (Tripartite motif protein 23) [Canis familiaris] 4.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR000315 EMBL-EBI Zn-finger, B-box 2.0E-6
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 2.3E-38
Sequence
Target Sequence 
>C. ELEGANS:194111_AT
ctgctgctgaacctactgcagttctagatcaatcacagttgagcacaagaattgcttttt
catttttaaatgataggaaattgcatatcggagatttcatcgaaagtcgagttgttttgt
taggtcttgatggtgctggcaaaacttcaatagtccgccgtttaaagaaagttcaaatgg
acacagtaatggctccacatccaacaatcggtttcaacatcgaaacgattcattataaaa
attatcgtctcaacttttgggacgttggcggattgccaaaacttcggcatctttggaaac
attattattcgaatgctcaggcgatattctatgtgattgatggatatgctgtggaacggt
tttccgaagcaattaaggagttgaatcgagttatgagtgatccgttagttggaacatgtc
ccgttattgtagctgtaaacaggaaagatggatatgctctaaacggtcacatggatgcgt
tactatcccaactcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTGCTGAACCTACTGCAGTTCT 423 237 1070 Antisense
TTGTTAGGTCTTGATGGTGCTGGCA 687 675 1186 Antisense
GGCAAAACTTCAATAGTCCGCCGTT 652 533 1207 Antisense
TGGACACAGTAATGGCTCCACATCC 672 547 1247 Antisense
CTTTTGGGACGTTGGCGGATTGCCA 422 219 1323 Antisense
GATTGCCAAAACTTCGGCATCTTTG 479 433 1340 Antisense
TGCTGTGGAACGGTTTTCCGAAGCA 478 577 1416 Antisense
TGATCCGTTAGTTGGAACATGTCCC 24 557 1467 Antisense
GAACATGTCCCGTTATTGTAGCTGT 396 351 1481 Antisense
GATGGATATGCTCTAAACGGTCACA 305 407 1516 Antisense
TGGATGCGTTACTATCCCAACTCGA 153 551 1541 Antisense
Sequence Source Affymetrix Proprietary Database