[Home] | [Total List]

[194110_at] EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (EIF-4E) (EIF4E) (MRNA CAP-BINDING PROTEIN) (EIF-4F 25 KD SUBUNIT)

Description F53A2.6 /REP_DB=WormBase Gene ID /WP=CE16098 /TR=SW:O45551 /GB=CAB04454.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (EIF-4E) (EIF4E) (MRNA CAP-BINDING PROTEIN) (EIF-4F 25 KD SUBUNIT)
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 69      6grp_total > 86      4grp_total > 17      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4374
1 2 3 4 range
A 2109
(-3)
P 		2738.1
(-2)
P 		2833.3
(-1.8)
P 		5857
(3)
P 		3748
B 1950.2
(-3)
P 		2817.7
(-1.8)
P 		3106.1
(-1.4)
P 		6324
(3)
P 		4374
C 2280.7
(-3)
P 		2991.7
(-1.9)
P 		3073.9
(-1.7)
P 		6051.7
(3)
P 		3771
avr 2113.3
(-3) 		2849.2
(-1.9) 		3004.4
(-1.7) 		6077.6
(3) 		3964

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2934
1 2 3 4 5 6 range
A 985
(-3)
P 		1571.6
(-1.7)
P 		1823.8
(-1.1)
P 		2402.7
(0.2)
P 		2354.9
(0.1)
P 		3611
(3)
P 		2626
B 1508.2
(-3)
P 		1523.4
(-2.9)
P 		2100.7
(-0.9)
P 		2193.6
(-0.6)
P 		2854.2
(1.7)
P 		3240.4
(3)
P 		1732
C 1613
(-2.3)
P 		1319.5
(-3)
P 		1936.2
(-1.6)
P 		2464.7
(-0.4)
P 		3116.4
(1.1)
P 		3919.1
(3)
P 		2600
avr 1368.7
(-3) 		1471.5
(-2.7) 		1953.6
(-1.4) 		2353.7
(-0.3) 		2775.2
(0.8) 		3590.2
(3) 		2222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 753
1 2 3 4 range
A 767.9
(1)
P 		594.4
(-3)
P 		740.7
(0.3)
P 		857.3
(3)
P 		263
B 621.9
(-3)
P 		695.9
(-2.4)
P 		719.8
(-2.2)
P 		1347.7
(3)
P 		726
C 755
(-3)
P 		860.1
(-1)
P 		1071.3
(3)
P 		1020.4
(2)
P 		316
avr 714.9
(-3) 		716.8
(-3) 		843.9
(-0.9) 		1075.1
(3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1130
1 2 3 4 5 6 range
A 181.6
(-3)
P 		558.9
(0.2)
P 		397.2
(-1.1)
P 		609.4
(0.7)
P 		710.6
(1.5)
P 		879.2
(3)
P 		698
B 524.8
(-2.8)
P 		507.1
(-3)
P 		510.1
(-3)
P 		581
(-2.4)
P 		1159.6
(2.6)
P 		1208.3
(3)
P 		701
C 597.9
(-1.7)
P 		402.6
(-3)
P 		492.8
(-2.4)
P 		495.7
(-2.4)
P 		1008.4
(1)
P 		1312
(3)
P 		909
avr 434.8
(-3) 		489.5
(-2.5) 		466.7
(-2.7) 		562
(-1.9) 		959.5
(1.5) 		1133.2
(3) 		698
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7303
Sequence Type Exemplar sequence
Representative Public ID F53A2.6 NCBI
Target Description F53A2.6 /REP_DB=WormBase Gene ID /WP=CE16098 /TR=SW:O45551 /GB=CAB04454.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (EIF-4E) (EIF4E) (MRNA CAP-BINDING PROTEIN) (EIF-4F 25 KD SUBUNIT)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067350 NCBI Caenorhabditis elegans Initiation Factor 4E (eIF4E) family member (ife-1) (ife-1) mRNA, complete cds. 11/11 None
SNAP00000020110 ENSEMBL cdna:SNAP chromosome:CEL140:III:13343342:13344026:1 11/11 None
GENEFINDER00000020123 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13343342:13344026:1 11/11 None
F53A2.6.1 ENSEMBL cdna:known chromosome:CEL140:III:13343090:13344961:1 gene:F53A2.6 11/11 None
F53A2.6.3 ENSEMBL cdna:known chromosome:CEL140:III:13343338:13344106:1 gene:F53A2.6 11/11 None
F53A2.6.2 ENSEMBL cdna:known chromosome:CEL140:III:13343340:13344961:1 gene:F53A2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13343119-13344022(+) 100.0 100.0
Public Domain and Genome References
Gene Title EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (EIF-4E) (EIF4E) (MRNA CAP-BINDING PROTEIN) (EIF-4F 25 KD SUBUNIT)
Gene Symbol ife-1
Ensembl F53A2.6
Entrez Gene 176755 Entrez gene
SwissProt O45551 EMBL-EBI
WormBase CE31809 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6413 translational initiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3743 translation initiation factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04454 Hypothetical protein F53A2.6 [Caenorhabditis elegans] ref|NP_499751.2| Initiation Factor 4E (eIF4E) family member (ife-1) [Caenorhabditis elegans] sp|O45551|IF4E1_CAEEL Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) 1.0E-124
blast T22530 hypothetical protein F53A2.6 - Caenorhabditis elegans 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR001040 EMBL-EBI Eukaryotic translation initiation factor 4E (eIF-4E) 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:194110_AT
caacaccgtctcggagttctgggctctctacgatgctatccgtccaccaagtggcctcaa
cgcgttgtgcgattacaacgttttccgtgacgatattcagccgatgtgggaggttccgga
aaactcgaacggaggacgctggctcatcgtcattgacaagggaaagactcccgaaatggt
cgatgctatttggctggagattctcatggctttggtcggcgagcaattcggaaaggacat
ggagtcgatttgtgggttggtgtgcaacgtcagaggaaaaggatcgaagatcagcgtctg
gactaaggattgcaacgatgatgaaaccaacatgaggattggagttgtgctgaaggagaa
gctgatggccgcatccaaggaccactcaaagccactgttcgatgtgatccgctacgaaga
tcatgagagctgccagaagaagaccagctcggttgtgaaagccaagctttcattgcactc
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACACCGTCTCGGAGTTCTGGGCT 629 187 192 Antisense
TATTCAGCCGATGTGGGAGGTTCCG 287 661 285 Antisense
AACTCGAACGGAGGACGCTGGCTCA 120 141 313 Antisense
ACGCTGGCTCATCGTCATTGACAAG 671 87 327 Antisense
AAGACTCCCGAAATGGTCGATGCTA 536 153 355 Antisense
GTCGATGCTATTTGGCTGGAGATTC 541 473 370 Antisense
GGAGATTCTCATGGCTTTGGTCGGC 562 517 387 Antisense
CATCCAAGGACCACTCAAAGCCACT 199 211 563 Antisense
AAGCCACTGTTCGATGTGATCCGCT 367 149 580 Antisense
GAAGACCAGCTCGGTTGTGAAAGCC 134 339 630 Antisense
AAAGCCAAGCTTTCATTGCACTCGT 592 125 649 Antisense
Sequence Source Affymetrix Proprietary Database