[Home] | [Total List]

[194108_s_at] Weak similarity with NADH-ubiquinone oxidoreductase subunit (Swiss Prot accession number Q05752)

Description F45H10.3 /REP_DB=WormBase Gene ID /WP=CE10546 /TR=O02267 /GB=CAB04385.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Weak similarity with NADH-ubiquinone oxidoreductase subunit (Swiss Prot accession number Q05752)
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 51      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 46      6grp_total > 42      4grp_total > 24      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2809
1 2 3 4 range
A 2253.1
(-3)
P 		3415.4
(-0.5)
P 		3384.7
(-0.6)
P 		5061.7
(3)
P 		2809
B 2406.5
(-3)
P 		3046.8
(-0.9)
P 		3692.4
(1.3)
P 		4215.7
(3)
P 		1809
C 2408.6
(-3)
P 		3240.8
(1.4)
P 		2850.2
(-0.7)
P 		3549.2
(3)
P 		1141
avr 2356.1
(-3) 		3234.3
(-0.3) 		3309.1
(-0) 		4275.5
(3) 		1919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2549
1 2 3 4 5 6 range
A 3217.4
(2.3)
P 		2330.7
(-1.2)
P 		3396.5
(3)
P 		2424.6
(-0.8)
P 		3058
(1.7)
P 		1866
(-3)
P 		1531
B 2665.2
(-1.6)
P 		2952.3
(-0.8)
P 		4415.4
(3)
P 		3500.5
(0.6)
P 		2904.8
(-0.9)
P 		2116.2
(-3)
P 		2299
C 2756
(0.8)
P 		2874.4
(1.4)
P 		2514.9
(-0.3)
P 		3225.6
(3)
P 		2748.8
(0.8)
P 		1926.1
(-3)
P 		1300
avr 2879.5
(0.7) 		2719.1
(0.1) 		3442.3
(3) 		3050.2
(1.4) 		2903.9
(0.8) 		1969.4
(-3) 		1473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 820.4
(0.3)
P 		741.4
(-3)
P 		884.8
(3)
P 		740.9
(-3)
P 		144
B 767.4
(-2.4)
P 		752.5
(-3)
P 		855.6
(1.2)
P 		898.4
(3)
P 		146
C 797.3
(0)
P 		931.8
(2.1)
P 		993.4
(3)
P 		598.5
(-3)
P 		395
avr 795
(-1.2) 		808.6
(-0.7) 		911.3
(3) 		745.9
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 726
1 2 3 4 5 6 range
A 593.1
(-1.2)
P 		828.9
(1.8)
P 		739.7
(0.7)
P 		614.9
(-0.9)
P 		922.8
(3)
P 		454.3
(-3)
P 		469
B 927.4
(-0.9)
P 		982.7
(-0)
P 		1072.2
(1.3)
P 		927.2
(-0.9)
P 		1180.2
(3)
P 		789.1
(-3)
P 		391
C 1021.5
(3)
P 		877.1
(0.7)
P 		640.1
(-3)
P 		648.7
(-2.9)
P 		889.5
(0.9)
P 		644.8
(-2.9)
P 		381
avr 847.3
(0.6) 		896.2
(1.3) 		817.3
(0.1) 		730.3
(-1.4) 		997.5
(3) 		629.4
(-3) 		368
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194108_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3129
Sequence Type Exemplar sequence
Representative Public ID F45H10.3 NCBI
Target Description F45H10.3 /REP_DB=WormBase Gene ID /WP=CE10546 /TR=O02267 /GB=CAB04385.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Weak similarity with NADH-ubiquinone oxidoreductase subunit (Swiss Prot accession number Q05752)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064438 NCBI Caenorhabditis elegans F45H10.3 (F45H10.3) mRNA, complete cds. 11/11 A 
SNAP00000000153 ENSEMBL cdna:SNAP chromosome:CEL140:II:13493147:13494489:-1 11/11 None
GENEFINDER00000000159 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13493147:13494489:-1 11/11 None
F45H10.3.2 ENSEMBL cdna:known chromosome:CEL140:II:13493077:13494496:-1 gene:F45H10.3 11/11 None
F45H10.3.3 ENSEMBL cdna:known chromosome:CEL140:II:13493077:13494498:-1 gene:F45H10.3 11/11 None
F45H10.3.1 ENSEMBL cdna:known chromosome:CEL140:II:13493077:13494498:-1 gene:F45H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13493143-13494486(-) 100.0 100.0
Public Domain and Genome References
Gene Title Weak similarity with NADH-ubiquinone oxidoreductase subunit (Swiss Prot accession number Q05752)
Ensembl F45H10.3
Entrez Gene 174993 Entrez gene
SwissProt O02267 EMBL-EBI
WormBase CE10546 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04385 Hypothetical protein F45H10.3 [Caenorhabditis elegans] ref|NP_496839.1| F45H10.3 [Caenorhabditis elegans] 3.0E-95
blast CAB04385 Hypothetical protein F45H10.3 [Caenorhabditis elegans] ref|NP_496839.1| F45H10.3 [Caenorhabditis elegans] 8.0E-88
blast CAE73341 Hypothetical protein CBG20772 [Caenorhabditis briggsae] 3.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR009947 EMBL-EBI NADH:ubiquinone oxidoreductase subunit B14.5a 2.5E-7
Sequence
Target Sequence 
>C. ELEGANS:194108_S_AT
gagcggtcgcaaaattgcggcggccactgttcaaaatcgcacccagacgccattctggaa
ctggcttaagcaaaagctgttggcttccgaccgactccccatcaccccgccaccaggaat
cgccggcccggacggaaaagcagtctaccagaaccctctccgcttcccaaacacccaatc
cgctcgtccttgctccgcagagctcccggctcttccaggaggtgttcatcacaagctcgc
tgataattattacttgacaagagacggccgccgaaacgtcgatgctccgaaagtgctcta
ctcgtctggcgagtttgttggaggagaaaaagcacagccagcgcaagtgaatcaaggagt
cgccacaaacttcggattgacagctccaacccctggttttggagccgaatggagccgatc
caagcagaatgagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGGTCGCAAAATTGCGGCGGCC 631 381 15 Antisense
GCAAAATTGCGGCGGCCACTGTTCA 405 319 23 Antisense
AATTGCGGCGGCCACTGTTCAAAAT 173 177 27 Antisense
GCGGCCACTGTTCAAAATCGCACCC 495 293 34 Antisense
ACTGTTCAAAATCGCACCCAGACGC 346 97 40 Antisense
CAGACGCCATTCTGGAACTGGCTTA 525 193 58 Antisense
GCCGGCCCGGACGGAAAAGCAGTCT 19 283 136 Antisense
GGAAAAGCAGTCTACCAGAACCCTC 590 527 148 Antisense
AGGAGAAAAAGCACAGCCAGCGCAA 224 55 336 Antisense
AGCCGAATGGAGCCGATCCAAGCAG 156 83 417 Antisense
GGAGCCGATCCAAGCAGAATGAGCT 380 521 425 Antisense
Sequence Source Affymetrix Proprietary Database