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[194103_at] Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)

Description C49F5.4 /REP_DB=WormBase Gene ID /WP=CE08855 /TR=O17683 /GB=CAB03978.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
Cluster 6grp_high1_10_10 > 06      4grp_high_8_8 > 09      6grp_total > 14      4grp_total > 23      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 88.9
(1.5)
P 		62.5
(-0.5)
A 		30.8
(-3)
A 		108.2
(3)
P 		77
B 88.1
(3)
P 		49.6
(-2)
P 		42.3
(-3)
A 		88.2
(3)
P 		46
C 130.6
(3)
P 		45.8
(-3)
A 		49.4
(-2.7)
P 		72.8
(-1.1)
P 		85
avr 102.5
(3) 		52.6
(-1.9) 		40.8
(-3) 		89.7
(1.8) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 113.8
(3)
P 		77.5
(0.3)
P 		109.5
(2.7)
P 		76.7
(0.2)
P 		63.5
(-0.8)
P 		33.6
(-3)
A 		80
B 134.1
(3)
P 		105.8
(1.2)
P 		68.9
(-1.2)
A 		49.7
(-2.5)
P 		48.2
(-2.6)
P 		41.6
(-3)
P 		93
C 119.8
(3)
P 		92.3
(1.1)
P 		55.1
(-1.5)
P 		74.7
(-0.1)
P 		32.7
(-3)
A 		43
(-2.3)
A 		87
avr 122.6
(3) 		91.9
(0.8) 		77.8
(-0.2) 		67
(-1) 		48.1
(-2.4) 		39.4
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 32.4
(3)
P 		13.6
(-1.6)
A 		8
(-3)
A 		15.8
(-1.1)
P 		24
B 28.1
(3)
P 		12.2
(-2.2)
P 		9.8
(-3)
A 		18.8
(-0)
P 		18
C 43.2
(3)
P 		13.2
(-2.8)
A 		17.2
(-2)
P 		12.3
(-3)
P 		31
avr 34.6
(3) 		13
(-2.7) 		11.7
(-3) 		15.6
(-2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 21
(1)
P 		27.6
(3)
P 		23.9
(1.9)
P 		19.5
(0.5)
P 		19.2
(0.4)
P 		8.2
(-3)
A 		19
B 46.7
(3)
P 		35.2
(0.9)
P 		16.7
(-2.4)
A 		13.2
(-3)
P 		19.6
(-1.9)
P 		15.5
(-2.6)
P 		34
C 44.4
(3)
P 		28.2
(0.1)
P 		14
(-2.4)
P 		15
(-2.2)
P 		10.6
(-3)
A 		14.4
(-2.3)
A 		34
avr 37.4
(3) 		30.3
(1.3) 		18.2
(-1.7) 		15.9
(-2.2) 		16.5
(-2.1) 		12.7
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16222
Sequence Type Exemplar sequence
Representative Public ID C49F5.4 NCBI
Target Description C49F5.4 /REP_DB=WormBase Gene ID /WP=CE08855 /TR=O17683 /GB=CAB03978.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077603 NCBI Caenorhabditis elegans C49F5.4 (C49F5.4) mRNA, complete cds. 11/11 None
C49F5.4 ENSEMBL cdna:known chromosome:CEL140:X:11980174:11981905:-1 gene:C49F5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033507 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11980173-11981905(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
Gene Symbol nhr-167
Ensembl C49F5.4
Entrez Gene 183613 Entrez gene
SwissProt O17683 EMBL-EBI
WormBase CE08855 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03978 Hypothetical protein C49F5.4 [Caenorhabditis elegans] ref|NP_510004.1| C49F5.4 [Caenorhabditis elegans] 0.0
blast AAG45579 Hypothetical protein ZK6.4 [Caenorhabditis elegans] ref|NP_503188.1| ZK6.4 [Caenorhabditis elegans] 1.0E-112
blast AAG45572 Hypothetical protein ZK6.2 [Caenorhabditis elegans] ref|NP_503191.1| ZK6.2 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.4E-59
Sequence
Target Sequence 
>C. ELEGANS:194103_AT
aaacttgggcctttcacagttgcgtcactactattgattttatgaagcagttcccatttg
ttaatcttctacgatcgactgaccagatgatcttattgaaagaaagttacgtgaagttgg
gtgcactgattagtgccacaagagcttattcatctaaaaagcaatgcatatcatttcccg
atggaactgattgtctgccaaaaacccaatggactgtgccgaaaatatctccaaatttag
aaaatcgaatcagatgtcgtgtgatagataaacttagagagctaaatatacaaaacgatg
aattttatttattgagtgtcttactgttttgtaatccagcaatcacaaatctttccgaaa
acgggcaacttttgttaacttcataccagaaaatgtacagttcggctcttctctattatt
gccttcttacttaccaaaaatcgggaccatctagattttctgaacttcttggcttattca
ctctacttggtcagcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTGGGCCTTTCACAGTTGCGT 117 115 443 Antisense
AGCAGTTCCCATTTGTTAATCTTCT 489 77 488 Antisense
AATCTTCTACGATCGACTGACCAGA 644 169 505 Antisense
GGAACTGATTGTCTGCCAAAAACCC 75 531 625 Antisense
GACTGTGCCGAAAATATCTCCAAAT 545 375 654 Antisense
ATCCAGCAATCACAAATCTTTCCGA 547 39 776 Antisense
AAAATGTACAGTTCGGCTCTTCTCT 457 133 832 Antisense
TCGGCTCTTCTCTATTATTGCCTTC 352 607 844 Antisense
TGCCTTCTTACTTACCAAAAATCGG 479 585 862 Antisense
CTGAACTTCTTGGCTTATTCACTCT 155 239 902 Antisense
TATTCACTCTACTTGGTCAGCACTA 520 661 917 Antisense
Sequence Source Affymetrix Proprietary Database