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[194094_s_at]

Description C48D5.2A /REP_DB=WormBase Gene ID /WP=CE17578 /GEN=ptp-1 /TR=SW:P28191 /GB=CAA85272.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase (non receptor type) and band 4.1-like domain
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 08      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 12      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 469.5
(-1.1)
P 		493.1
(-0.6)
P 		366.8
(-3)
P 		684.4
(3)
P 		318
B 500.2
(-0.8)
P 		416.7
(-2.4)
P 		384.8
(-3)
P 		706.5
(3)
P 		322
C 467.6
(-1.6)
P 		457.7
(-2.3)
P 		448.7
(-3)
P 		530.2
(3)
P 		82
avr 479.1
(-1) 		455.8
(-1.6) 		400.1
(-3) 		640.4
(3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 419.7
(0.9)
P 		464.1
(1.9)
P 		243.5
(-3)
P 		515.6
(3)
P 		400
(0.5)
P 		322.5
(-1.3)
P 		272
B 494.8
(0.7)
P 		501.3
(0.8)
P 		617.7
(3)
P 		433.5
(-0.4)
P 		399.4
(-1.1)
P 		295.2
(-3)
P 		323
C 664.7
(3)
P 		442
(-0.3)
P 		428.3
(-0.5)
P 		452
(-0.2)
P 		596.5
(2)
P 		260.7
(-3)
P 		404
avr 526.4
(3) 		469.1
(1.5) 		429.8
(0.5) 		467
(1.5) 		465.3
(1.4) 		292.8
(-3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 170.9
(3)
P 		107
(-2.1)
P 		95.9
(-3)
P 		100.2
(-2.7)
P 		75
B 159.5
(3)
P 		102.9
(-1.8)
P 		89.2
(-3)
P 		150.5
(2.2)
P 		70
C 154.8
(2.9)
P 		131.6
(0.8)
P 		156.4
(3)
P 		89.4
(-3)
P 		67
avr 161.7
(3) 		113.8
(-3) 		113.8
(-3) 		113.4
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 77.4
(-1.7)
P 		165.1
(3)
P 		53
(-3)
P 		130.8
(1.2)
P 		120.7
(0.6)
P 		78.5
(-1.6)
P 		112
B 172.2
(3)
P 		166.9
(2.5)
P 		150
(0.9)
P 		114.8
(-2.5)
P 		162.3
(2)
P 		110.1
(-3)
P 		62
C 246.4
(3)
P 		134.9
(-1.2)
P 		109
(-2.2)
P 		90.9
(-2.9)
P 		193
(1)
P 		87.3
(-3)
P 		159
avr 165.3
(3) 		155.6
(2.2) 		104
(-2) 		112.2
(-1.3) 		158.7
(2.5) 		92
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194094_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6472
Sequence Type Exemplar sequence
Representative Public ID C48D5.2A NCBI
Target Description C48D5.2A /REP_DB=WormBase Gene ID /WP=CE17578 /GEN=ptp-1 /TR=SW:P28191 /GB=CAA85272.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase (non receptor type) and band 4.1-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065331(11), NM_171099(11), NM_065332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065331 NCBI Caenorhabditis elegans Protein Tyrosine Phosphatase family member (ptp-1) (ptp-1) mRNA, complete cds. 11/11 None
NM_171099 NCBI Caenorhabditis elegans Protein Tyrosine Phosphatase family member (ptp-1) (ptp-1) mRNA, complete cds. 11/11 None
NM_065332 NCBI Caenorhabditis elegans Protein Tyrosine Phosphatase family member (ptp-1) (ptp-1) mRNA, complete cds. 11/11 None
SNAP00000010766 ENSEMBL cdna:SNAP chromosome:CEL140:III:3606050:3611545:1 11/11 None
C48D5.2a ENSEMBL cdna:known chromosome:CEL140:III:3590717:3611974:1 gene:C48D5.2 11/11 A 
C48D5.2c ENSEMBL cdna:known chromosome:CEL140:III:3595204:3611545:1 gene:C48D5.2 11/11 None
C48D5.2b ENSEMBL cdna:known chromosome:CEL140:III:3599118:3611545:1 gene:C48D5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010776 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3590752-3611545(+) 100.0 100.0
Public Domain and Genome References
Ensembl C48D5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88287 Hypothetical protein C48D5.2a [Caenorhabditis elegans] emb|CAA85272.1| Hypothetical protein C48D5.2a [Caenorhabditis elegans] ref|NP_497732.1| Protein Tyrosine Phosphatase family member (ptp-1) [Caenorhabditis elegans] sp|P28191|PTP1_CAEEL Tyrosine-protein phosphatase 1 (Protein-tyrosine phosphatase 1) 0.0
blast CAE64934 Hypothetical protein CBG09764 [Caenorhabditis briggsae] 0.0
blast CAD44101 Hypothetical protein C48D5.2c [Caenorhabditis elegans] emb|CAD44107.1| Hypothetical protein C48D5.2c [Caenorhabditis elegans] ref|NP_741112.1| Protein Tyrosine Phosphatase family member (ptp-1) [Caenorhabditis elegans] 0.0
blast CAB54194 Hypothetical protein C48D5.2b [Caenorhabditis elegans] ref|NP_497733.1| Protein Tyrosine Phosphatase family member (ptp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.9E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-113
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.9E-27
Pfam IPR000299 EMBL-EBI Band 4.1 1.0E-126
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-113
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.9E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-113
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.9E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-113
Sequence
Target Sequence 
>C. ELEGANS:194094_S_AT
tcgatacattgcctgccagggaccccttgcacatacttcctccgatttctgggtgatggt
atgggagcaacactgtacgacgattgtgatgttgactacaataaccgaaagaggacgtgt
gaaatgtcatcaatattggccacgtgtattcgaaacacaggagtacggtcgattgatgat
caagtgtatcaaggataagcagacgacgaattgttgttatcgagagtttagtataaggga
tagaaattctagcgaagaacgacgggtgacccaaatgcagtacatcgcgtggcccgacca
tggagttccagacgatccgaaacactttattcaatttgtggatgaagttcgaaaagcacg
acaaggatcagttgatccgattgttgtacactgttcggcgggaattggaagaactggggt
tcttattttaatggagactgccgcgtgtcttgttgaatcaaatgaacctgtatatccatt
agatattgtgaggacgatgagagatcaaagggcaatgcttattcagacaccgggccaata
cacatttgtgtgtgaatcaattctacgtgcctaccacgacggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATACATTGCCTGCCAGGGACCC 475 601 2475 Antisense
ATACTTCCTCCGATTTCTGGGTGAT 397 23 2507 Antisense
GGGAGCAACACTGTACGACGATTGT 594 495 2537 Antisense
TAGCGAAGAACGACGGGTGACCCAA 231 651 2724 Antisense
CCAAATGCAGTACATCGCGTGGCCC 383 275 2745 Antisense
GAGTTCCAGACGATCCGAAACACTT 666 397 2777 Antisense
ATTGTTGTACACTGTTCGGCGGGAA 486 1 2854 Antisense
AGACTGCCGCGTGTCTTGTTGAATC 387 71 2909 Antisense
GCAATGCTTATTCAGACACCGGGCC 24 323 2986 Antisense
GACACCGGGCCAATACACATTTGTG 508 367 3000 Antisense
TTCTACGTGCCTACCACGACGGAAC 424 689 3035 Antisense
Sequence Source Affymetrix Proprietary Database