[Home] | [Total List]

[194084_at] Elongation factor Tu family (contains ATP/GTP binding P-loop), Elongation factor G C-terminus

Description F29C12.4 /REP_DB=WormBase Gene ID /WP=CE19822 /TR=Q9XV52 /GB=CAB04216.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Elongation factor Tu family (contains ATP-GTP binding P-loop), Elongation factor G C-terminus
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 37      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 0      6grp_total > 35      4grp_total > 56      6grp_highest_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1132
1 2 3 4 range
A 2093.2
(-0.7)
P 		2256.7
(0.6)
P 		2543.9
(3)
P 		1819.4
(-3)
P 		725
B 1908.3
(-3)
P 		2017.7
(-2.1)
P 		2614
(3)
P 		2179
(-0.7)
P 		706
C 2158.7
(-0.9)
P 		2006.6
(-1.7)
P 		2888.6
(3)
P 		1757
(-3)
P 		1132
avr 2053.4
(-1.9) 		2093.7
(-1.6) 		2682.2
(3) 		1918.5
(-3) 		764

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1443
1 2 3 4 5 6 range
A 2163.7
(3)
P 		1845
(1.3)
P 		1347.2
(-1.4)
P 		1264.7
(-1.8)
P 		1051.1
(-3)
P 		1701.2
(0.5)
P 		1113
B 2076.9
(3)
P 		1690.7
(1)
P 		1921.8
(2.2)
P 		1299.3
(-1)
P 		921.1
(-3)
P 		1521.8
(0.1)
P 		1156
C 2363.6
(3)
P 		1660.8
(-0.7)
P 		1718.3
(-0.4)
P 		1282.2
(-2.7)
P 		1229.2
(-3)
P 		1512.4
(-1.5)
P 		1134
avr 2201.4
(3) 		1732.2
(0.5) 		1662.4
(0.1) 		1282.1
(-1.9) 		1067.1
(-3) 		1578.5
(-0.3) 		1134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 741
1 2 3 4 range
A 762.1
(3)
P 		489.9
(-0.3)
P 		665
(1.8)
P 		266.3
(-3)
P 		496
B 608.5
(3)
P 		498.3
(-1.6)
P 		605.7
(2.9)
P 		464.3
(-3)
P 		144
C 714.6
(0.5)
P 		576.9
(-0.6)
P 		1006.8
(3)
P 		296.3
(-3)
P 		711
avr 695.1
(2.1) 		521.7
(-0.4) 		759.2
(3) 		342.3
(-3) 		417

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 618
1 2 3 4 5 6 range
A 398.9
(-1.3)
P 		656.2
(3)
P 		293.4
(-3)
P 		320.8
(-2.5)
P 		317.2
(-2.6)
P 		414.2
(-1)
P 		363
B 722.7
(3)
P 		562.8
(0.5)
P 		466.7
(-1.1)
P 		344.1
(-3)
P 		374.2
(-2.5)
P 		567.5
(0.5)
P 		379
C 876.1
(3)
P 		506.8
(-0.6)
P 		437.3
(-1.3)
P 		257.9
(-3)
P 		397.7
(-1.6)
P 		506.3
(-0.6)
P 		618
avr 665.9
(3) 		575.3
(1.5) 		399.1
(-1.5) 		307.6
(-3) 		363
(-2.1) 		496
(0.2) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2989
Sequence Type Exemplar sequence
Representative Public ID F29C12.4 NCBI
Target Description F29C12.4 /REP_DB=WormBase Gene ID /WP=CE19822 /TR=Q9XV52 /GB=CAB04216.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Elongation factor Tu family (contains ATP-GTP binding P-loop), Elongation factor G C-terminus
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064386 NCBI Caenorhabditis elegans F29C12.4 (F29C12.4) mRNA, complete cds. 11/11 None
SNAP00000014925 ENSEMBL cdna:SNAP chromosome:CEL140:II:13117389:13121766:1 11/11 None
GENEFINDER00000014931 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13117389:13121766:1 11/11 None
F29C12.4.2 ENSEMBL cdna:known chromosome:CEL140:II:13117377:13121981:1 gene:F29C12.4 11/11 None
F29C12.4.1 ENSEMBL cdna:known chromosome:CEL140:II:13117379:13121981:1 gene:F29C12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F29C12.7 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13117385-13121763(+) 100.0 100.0
Public Domain and Genome References
Gene Title Elongation factor Tu family (contains ATP/GTP binding P-loop), Elongation factor G C-terminus
Ensembl F29C12.4
Entrez Gene 174956 Entrez gene
SwissProt Q9XV52 EMBL-EBI
WormBase CE19822 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15015_AT mitochondrial elongation factor, putative at
ATH1-121501:266127_S_AT mitochondrial elongation factor, putative at
CANINE:1591635_AT similar to G elongation factor, mitochondrial 1 cfa
CANINE_2:CFA.12712.1.S1_AT similar to G elongation factor, mitochondrial 1 cfa
CANINE_2:CFA.16684.1.A1_AT similar to G elongation factor, mitochondrial 1 cfa
CANINE_2:CFA.16686.1.A1_AT similar to G elongation factor, mitochondrial 1 cfa
CANINE_2:CFAAFFX.14272.1.S1_S_AT similar to G elongation factor, mitochondrial 1 cfa
DROSOPHILA_2:1623715_AT dm
DROSGENOME1:145947_AT dm
CHICKEN:GGAAFFX.12059.1.S1_AT G elongation factor, mitochondrial 1 gga
CHICKEN:GGAAFFX.12059.1.S1_S_AT G elongation factor, mitochondrial 1 gga
HG-U133_PLUS_2:232295_AT G elongation factor, mitochondrial 1 hs
HG-U133B:232295_AT G elongation factor, mitochondrial 1 hs
HG-U133_PLUS_2:232296_S_AT G elongation factor, mitochondrial 1 hs
HG-U133B:232296_S_AT G elongation factor, mitochondrial 1 hs
HG-U133_PLUS_2:220903_AT G elongation factor, mitochondrial 1 hs
HG-U133A:220903_AT G elongation factor, mitochondrial 1 hs
HG-U133A_2:220903_AT G elongation factor, mitochondrial 1 hs
HU35KSUBA:HUM_ALU_AT G elongation factor, mitochondrial 1 hs
HU35KSUBB:HUM_ALU_AT G elongation factor, mitochondrial 1 hs
HU35KSUBC:HUM_ALU_AT G elongation factor, mitochondrial 1 hs
HU35KSUBD:HUM_ALU_AT G elongation factor, mitochondrial 1 hs
HUGENEFL:HUM_ALU_AT G elongation factor, mitochondrial 1 hs
HC-G110:HUM_ALU_AT G elongation factor, mitochondrial 1 hs
HU35KSUBC:RC_N90141_AT G elongation factor, mitochondrial 1 hs
HU35KSUBC:RC_AA011122_AT G elongation factor, mitochondrial 1 hs
U133_X3P:G13376503_3P_S_AT G elongation factor, mitochondrial 1 hs
U133_X3P:HS.41066.0.A3_3P_AT G elongation factor, mitochondrial 1 hs
U133_X3P:HS.41066.0.A2_3P_AT G elongation factor, mitochondrial 1 hs
U133_X3P:HS.41066.0.A1_3P_AT G elongation factor, mitochondrial 1 hs
U133_X3P:HS.274543.0.S1_3P_AT G elongation factor, mitochondrial 1 hs
HG-U133_PLUS_2:225153_AT G elongation factor, mitochondrial 1 hs
HG-U133B:225153_AT G elongation factor, mitochondrial 1 hs
HG-U133_PLUS_2:225158_AT G elongation factor, mitochondrial 1 hs
HG-U133B:225158_AT G elongation factor, mitochondrial 1 hs
HG-U133_PLUS_2:225161_AT G elongation factor, mitochondrial 1 hs
HG-U133B:225161_AT G elongation factor, mitochondrial 1 hs
HG-U95B:52012_AT G elongation factor, mitochondrial 1 hs
HG-U95C:63705_F_AT G elongation factor, mitochondrial 1 hs
HG-U95D:80567_AT G elongation factor, mitochondrial 1 hs
HG-U95C:66532_AT G elongation factor, mitochondrial 1 hs
HG-U95E:67343_AT G elongation factor, mitochondrial 1 hs
MU11KSUBA:AA162840_S_AT G elongation factor 1 mm
MU11KSUBB:MSA.4492.0_S_AT G elongation factor 1 mm
MG-U74AV2:160226_AT G elongation factor 1 mm
MG-U74CV2:168366_AT G elongation factor 1 mm
MOE430A:1416570_S_AT G elongation factor 1 mm
MOUSE430A_2:1416570_S_AT G elongation factor 1 mm
MOUSE430_2:1416570_S_AT G elongation factor 1 mm
MOE430A:1448381_AT G elongation factor 1 mm
MOUSE430A_2:1448381_AT G elongation factor 1 mm
MOUSE430_2:1448381_AT G elongation factor 1 mm
MU19KSUBC:TC37245_AT G elongation factor 1, mRNA (cDNA clone MGC:25967 IMAGE:4239980) mm
RG-U34A:L14684_AT G elongation factor rn
RAE230A:1367756_AT G elongation factor rn
RAT230_2:1367756_AT G elongation factor rn
YEAST_2:1773147_AT Mitochondrial elongation factor involved in translational elongation Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
6414 translational elongation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3746 translation elongation factor activity inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04216 Hypothetical protein F29C12.4 [Caenorhabditis elegans] ref|NP_496787.1| F29C12.4 [Caenorhabditis elegans] sp|Q9XV52|EFGM_CAEEL Probable elongation factor G, mitochondrial precursor (mEF-G) 0.0
blast CAE59414 Hypothetical protein CBG02783 [Caenorhabditis briggsae] 0.0
blast EAL33465 GA18263-PA [Drosophila pseudoobscura] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000640 EMBL-EBI Elongation factor G, C-terminal 7.5E-34
Pfam IPR005517 EMBL-EBI Elongation factor G, domain IV 3.6E-44
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 1.6E-17
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 7.4E-88
Pfam IPR000640 EMBL-EBI Elongation factor G, C-terminal 7.5E-34
Pfam IPR005517 EMBL-EBI Elongation factor G, domain IV 3.6E-44
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 1.6E-17
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 3.3E-73
Sequence
Target Sequence 
>C. ELEGANS:194084_AT
agtcattgatccactaccatctgatcgcaatactgtcgttgaattctccgacgagacatt
cggaaacaatatcccgaagaatctgttcccggctctcaagaagggtctcgacgcgattgt
cgccgagggtccacttatcaagtctagaatcgctggaattcatgttcggatccaagatgg
ttcaactcatgctgtagactccacggaaatcgctatgatcaatacaatgcaaaacatgat
gcgtgaatcattcgaaaaagcgaattggctgctcctcgagccaattatgaaagtagaagc
tacagttccaacggaattccagggaaatgtagtgacatcactcacccagagaaatgcact
gatcaccaccaccgattcgacggaaggatacgcgactgtgatctgtgaagctccactgtc
ggacatgttcggatacacttcagagctacgatcgttaacggaaggaaaaggagaattcag
tatggaatattcaagatatgcacctacaacactggaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCATTGATCCACTACCATCTGAT 464 61 1665 Antisense
ACCATCTGATCGCAATACTGTCGTT 404 87 1680 Antisense
ATCCCGAAGAATCTGTTCCCGGCTC 332 25 1735 Antisense
GTTCCCGGCTCTCAAGAAGGGTCTC 541 439 1749 Antisense
CCGAGGGTCCACTTATCAAGTCTAG 531 261 1787 Antisense
GTTCAACTCATGCTGTAGACTCCAC 575 443 1844 Antisense
AGACTCCACGGAAATCGCTATGATC 675 69 1860 Antisense
AAAAAGCGAATTGGCTGCTCCTCGA 19 131 1919 Antisense
GTCGGACATGTTCGGATACACTTCA 212 473 2082 Antisense
ATACACTTCAGAGCTACGATCGTTA 660 23 2097 Antisense
GATATGCACCTACAACACTGGAAGC 600 425 2159 Antisense
Sequence Source Affymetrix Proprietary Database