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[194073_at] Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)

Description T07C5.5 /REP_DB=WormBase Gene ID /WP=CE06383 /TR=Q22297 /GB=CAA90298.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
Cluster 6grp_total > 01      4grp_total > 17      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 5.5
(-2.3)
A 		8.8
(-1.4)
A 		3
(-3)
A 		24.4
(3)
A 		21
B 6
(-2.1)
A 		23.8
(3)
A 		7.7
(-1.6)
A 		2.9
(-3)
A 		21
C 6.2
(-3)
A 		7.4
(-2.8)
A 		25.2
(-0.2)
A 		47.3
(3)
A 		41
avr 5.9
(-3) 		13.3
(-0.7) 		12
(-1.1) 		24.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6
(-2.9)
A 		29.7
(3)
A 		5.6
(-3)
A 		11.2
(-1.6)
A 		8.8
(-2.2)
A 		6.6
(-2.8)
A 		24
B 37.9
(2.5)
A 		41.1
(3)
A 		19.2
(-0.6)
A 		4.2
(-3)
A 		30.6
(1.3)
A 		23.1
(0.1)
A 		37
C 12.5
(-1.6)
A 		40.8
(3)
A 		29.8
(1.2)
A 		6.8
(-2.5)
A 		3.8
(-3)
A 		20.7
(-0.3)
A 		37
avr 18.8
(-0.7) 		37.2
(3) 		18.2
(-0.8) 		7.4
(-3) 		14.4
(-1.6) 		16.8
(-1.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2
(-0.4)
A 		1.9
(-0.6)
A 		0.8
(-3)
A 		3.6
(3)
A 		3
B 1.9
(-1.5)
A 		5.9
(3)
A 		1.8
(-1.6)
A 		0.6
(-3)
A 		5
C 2
(-3)
A 		2.1
(-2.9)
A 		8.8
(3)
A 		8
(2.3)
A 		7
avr 2
(-3) 		3.3
(0.7) 		3.8
(2.1) 		4.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-3)
A 		10.6
(3)
A 		1.2
(-2.9)
A 		2.9
(-1.9)
A 		2.6
(-2.1)
A 		1.6
(-2.7)
A 		10
B 13.2
(2.8)
A 		13.7
(3)
A 		4.7
(-1.3)
A 		1.1
(-3)
A 		12.4
(2.4)
A 		8.6
(0.6)
A 		13
C 4.6
(-1.2)
A 		12.5
(3)
A 		7.6
(0.4)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		6.9
(0)
A 		11
avr 6.3
(-0.4) 		12.3
(3) 		4.5
(-1.5) 		1.8
(-3) 		5.4
(-0.9) 		5.7
(-0.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17719
Sequence Type Exemplar sequence
Representative Public ID T07C5.5 NCBI
Target Description T07C5.5 /REP_DB=WormBase Gene ID /WP=CE06383 /TR=Q22297 /GB=CAA90298.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077718 NCBI Caenorhabditis elegans T07C5.5 (T07C5.5) mRNA, complete cds. 11/11 None
T07C5.5 ENSEMBL cdna:known chromosome:CEL140:X:12695667:12697906:-1 gene:T07C5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042493 8/11 Cross Hyb Matching Probes None
SNAP00000042491 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12695666-12697906(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
Gene Symbol nhr-26
Ensembl T07C5.5
Entrez Gene 188212 Entrez gene
SwissProt Q22297 EMBL-EBI
WormBase CE06383 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90298 Hypothetical protein T07C5.5 [Caenorhabditis elegans] ref|NP_510119.1| T07C5.5 [Caenorhabditis elegans] 0.0
blast CAE63732 Hypothetical protein CBG08259 [Caenorhabditis briggsae] 9.0E-81
blast CAA99860 Hypothetical protein F55D12.3 [Caenorhabditis elegans] ref|NP_492180.1| F55D12.3 [Caenorhabditis elegans] 6.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.6E-49
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.2E-12
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:194073_AT
ggaacagtgttcaacttttgcgactggggtgttataaatcatctctcgtgtataagtttc
atacgacaattggattttataaaatttctatccagtcaagacacgatagcaatttttaag
tactctcacttaatgtatcttatactggttactgcaatgcgatcatacctgtgcaaggaa
gccgcgatgaaccatcctggaaaagttgatgtcttcccagaagaagctcaatatgcagcc
ggatacaataaacaattactcaatgatatcagatgcttgcttgtaggaagacttagtgaa
attaaaatcacacacgaagagtttattctactcagtgtaatcattctatgcaatcctggc
gcaacaaacttatcgaaatcgggacggataatcctagccagtaaccaagaaagattcagc
tcaattctgcttcactattgcttgataacgaactccaaatgtggaccagcaagatttaac
gagatcttatctctctgtcatgtggtttctagaacactttctgatcttgacaacttaacg
tgtttgtattcattagtacatacagtacctgctcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAGTGTTCAACTTTTGCGACT 659 527 400 Antisense
GGGGTGTTATAAATCATCTCTCGTG 49 499 425 Antisense
GCAATGCGATCATACCTGTGCAAGG 30 321 553 Antisense
AAGCCGCGATGAACCATCCTGGAAA 172 149 578 Antisense
GTAATCATTCTATGCAATCCTGGCG 344 463 736 Antisense
GCAATCCTGGCGCAACAAACTTATC 490 321 749 Antisense
GACGGATAATCCTAGCCAGTAACCA 151 375 782 Antisense
GATTCAGCTCAATTCTGCTTCACTA 416 431 812 Antisense
TTATCTCTCTGTCATGTGGTTTCTA 637 679 886 Antisense
GAACACTTTCTGATCTTGACAACTT 225 353 911 Antisense
TAGTACATACAGTACCTGCTCCTCC 466 653 953 Antisense
Sequence Source Affymetrix Proprietary Database