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[194069_s_at] Rat insulin-like growth factor binding protien complex acid labile chain like

Description K07A12.2 /REP_DB=WormBase Gene ID /WP=CE11866 /TR=P90920 /GB=CAB03182.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Rat insulin-like growth factor binding protien complex acid labile chain like
Cluster 6grp_high1_10_10 > 88      6grp_total > 97      4grp_total > 49      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 120.9
(-3)
A 		500.5
(3)
P 		475.5
(2.6)
P 		159.5
(-2.4)
A 		380
B 85.4
(-3)
A 		501.3
(2.8)
P 		513.2
(3)
P 		122.4
(-2.5)
A 		428
C 120.1
(-3)
A 		553
(3)
P 		519.4
(2.5)
P 		145.9
(-2.6)
A 		433
avr 108.8
(-3) 		518.3
(3) 		502.7
(2.8) 		142.6
(-2.5) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 709
1 2 3 4 5 6 range
A 340.8
(-2)
P 		260.8
(-2.6)
P 		219.3
(-3)
P 		410.7
(-1.4)
P 		592.4
(0.2)
P 		928
(3)
P 		709
B 343.7
(-1.9)
P 		287.9
(-2.6)
P 		257.7
(-3)
M 		416.2
(-0.9)
P 		538.4
(0.7)
P 		707.4
(3)
P 		450
C 388.9
(-1.6)
P 		331
(-2.4)
P 		286.1
(-3)
P 		428.9
(-1.1)
P 		605.5
(1.4)
P 		725.8
(3)
P 		440
avr 357.8
(-1.8) 		293.2
(-2.6) 		254.4
(-3) 		418.6
(-1.2) 		578.8
(0.7) 		787.1
(3) 		533
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 44
(-1.8)
A 		108.6
(2.1)
P 		124.3
(3)
P 		23.3
(-3)
A 		101
B 27.2
(-2.9)
A 		123.8
(3)
P 		118.9
(2.7)
P 		26.1
(-3)
A 		98
C 39.8
(-2.4)
A 		159
(2.2)
P 		181
(3)
P 		24.6
(-3)
A 		156
avr 37
(-2.4) 		130.5
(2.4) 		141.4
(3) 		24.7
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 62.8
(-2.5)
P 		92.8
(-1.5)
P 		47.8
(-3)
P 		104.2
(-1.1)
P 		178.7
(1.4)
P 		225.9
(3)
P 		178
B 119.6
(-1.3)
P 		95.8
(-2)
P 		62.6
(-3)
M 		110.2
(-1.6)
P 		218.7
(1.7)
P 		263.8
(3)
P 		201
C 144.2
(-0.5)
P 		101
(-2)
P 		72.8
(-3)
P 		86.2
(-2.5)
P 		195.9
(1.3)
P 		243
(3)
P 		170
avr 108.9
(-1.4) 		96.5
(-1.8) 		61.1
(-3) 		100.2
(-1.7) 		197.8
(1.5) 		244.2
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194069_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2117
Sequence Type Exemplar sequence
Representative Public ID K07A12.2 NCBI
Target Description K07A12.2 /REP_DB=WormBase Gene ID /WP=CE11866 /TR=P90920 /GB=CAB03182.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Rat insulin-like growth factor binding protien complex acid labile chain like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059947 NCBI Caenorhabditis elegans K07A12.2 (K07A12.2) mRNA, complete cds. 11/11 None
SNAP00000033546 ENSEMBL cdna:SNAP chromosome:CEL140:I:8685200:8688183:-1 11/11 None
GENEFINDER00000033556 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8685200:8690271:-1 11/11 None
K07A12.2 ENSEMBL cdna:known chromosome:CEL140:I:8684797:8689444:-1 gene:K07A12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8685130-8689293(-) 100.0 100.0
Public Domain and Genome References
Gene Title Rat insulin-like growth factor binding protien complex acid labile chain like
Ensembl K07A12.2
Entrez Gene 172670 Entrez gene
SwissProt P90920 EMBL-EBI
WormBase CE11866 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.574.1.S1_AT similar to leucine rich repeat containing 15 cfa
DROSOPHILA_2:1634776_AT dm
DROSGENOME1:151783_AT dm
HG-U95AV2:34778_AT leucine rich repeat containing 15 hs
HG-U133_PLUS_2:213909_AT leucine rich repeat containing 15 hs
HG-U133A_2:213909_AT leucine rich repeat containing 15 hs
HG-U133A:213909_AT leucine rich repeat containing 15 hs
HU35KSUBA:RC_AA232956_AT leucine rich repeat containing 15 hs
U133_X3P:HS2.352644.1.S1_3P_AT leucine rich repeat containing 15 hs
U133_X3P:HS.288467.0.S1_3P_AT leucine rich repeat containing 15 hs
HG-U133_PLUS_2:1552960_AT leucine rich repeat containing 15 hs
MG-U74BV2:105160_AT leucine rich repeat containing 15 mm
MG-U74BV2:115195_AT leucine rich repeat containing 15 mm
MG-U74CV2:128791_AT leucine rich repeat containing 15 mm
MOE430B:1453214_AT leucine rich repeat containing 15 mm
MOUSE430_2:1453214_AT leucine rich repeat containing 15 mm
MOE430B:1436055_AT leucine rich repeat containing 15 mm
MOUSE430_2:1436055_AT leucine rich repeat containing 15 mm
RAT230_2:1370709_AT leucine-rich repeat protein induced by beta-amyloid rn
RAE230A:1370709_AT leucine-rich repeat protein induced by beta-amyloid rn
Protein Similarities
Method ID Description E-Value
blast CAB03182 Hypothetical protein K07A12.2 [Caenorhabditis elegans] ref|NP_492348.1| K07A12.2 [Caenorhabditis elegans] 0.0
blast CAE68896 Hypothetical protein CBG14867 [Caenorhabditis briggsae] 0.0
blast CAE63200 Hypothetical protein CBG07555 [Caenorhabditis briggsae] 5.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.04
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0013
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.092
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.074
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0070
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.24
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.095
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0012
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.18
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.035
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.3
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0067
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 3.1E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.074
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.092
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.074
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0070
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.24
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.095
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0012
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.18
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.035
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.3
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0067
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 3.1E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.04
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0013
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.092
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.074
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0070
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.24
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.095
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0012
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.18
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.035
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.3
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0067
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 3.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492348.1 1 856-878
K07A12.2 1 856-878
SNAP00000033546 1 728-750
GENEFINDER00000033556 1 901-923
Sequence
Target Sequence 
>C. ELEGANS:194069_S_AT
ctccctccaggatacaatctgagcaagataccgatggaagtgatagctgctgtgacacgt
ggagaagtaccagatatgcgtctattacctgaagaccttttggaacatttcaaacaacac
acaacttccctgacatcaatgttcgctggagccaccgcaaagaatatttcaattgaagag
attcttgagaaattgccagtctttgtgagacccgaactttcaacgtttgtaccatatgat
atcaacgagttgacaagtgaaatggttttggagcaagagcagaatgaacgacatcgtaat
attcgaatcatcactgcgattgcattagcgtttgttggagctgttacggtggttgtaatc
atattttttgtgaactatacgaagaaacaaagaaggctgagaaaaagccttgtctaccga
tcatcaccttcttcatctggatcatctggtcaaaacgctgcaaatgaatctggccgttca
tccgctgctccatctccaattcgtcctccattgatgaacatcccaaagacgcctaacaac
cgtacaatggagagcacatttgggcaacctcagttgtgctccacactgcttgaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCTCCAGGATACAATCTGAGCA 102 235 2269 Antisense
TCAAACAACACACAACTTCCCTGAC 341 627 2378 Antisense
TGACATCAATGTTCGCTGGAGCCAC 368 571 2399 Antisense
GAGAAAAAGCCTTGTCTACCGATCA 538 387 2667 Antisense
GATCATCACCTTCTTCATCTGGATC 162 421 2687 Antisense
GGATCATCTGGTCAAAACGCTGCAA 251 511 2707 Antisense
CAAATGAATCTGGCCGTTCATCCGC 354 193 2729 Antisense
TTCGTCCTCCATTGATGAACATCCC 600 695 2768 Antisense
TGAACATCCCAAAGACGCCTAACAA 161 573 2783 Antisense
TTTGGGCAACCTCAGTTGTGCTCCA 36 667 2827 Antisense
GTTGTGCTCCACACTGCTTGAAAAT 481 437 2841 Antisense
Sequence Source Affymetrix Proprietary Database