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[194068_s_at] Rat insulin-like growth factor binding protein complex acid labile chain like

Description T23G11.6 /REP_DB=WormBase Gene ID /WP=CE14102 /TR=O02329 /GB=CAB03418.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Rat insulin-like growth factor binding protein complex acid labile chain like
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 52      6grp_total > 22      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 848
1 2 3 4 range
A 714.6
(0.7)
P 		1023.3
(3)
P 		705.1
(0.6)
P 		223
(-3)
P 		800
B 759.4
(1.6)
P 		932.1
(3)
P 		798.9
(1.9)
P 		175
(-3)
P 		757
C 875.5
(2.8)
P 		842.3
(2.6)
P 		893.5
(3)
P 		192.3
(-3)
P 		701
avr 783.2
(1.8) 		932.6
(3) 		799.2
(1.9) 		196.8
(-3) 		736

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 746
1 2 3 4 5 6 range
A 736.8
(1.3)
P 		902.8
(2.7)
P 		946.1
(3)
P 		859.2
(2.3)
P 		633.1
(0.5)
P 		200.4
(-3)
P 		746
B 719.9
(1.6)
P 		751.1
(1.9)
P 		853.3
(3)
P 		851.2
(3)
P 		606.3
(0.3)
P 		294.6
(-3)
P 		559
C 937.4
(3)
P 		899.7
(2.7)
P 		819.1
(1.9)
P 		768.7
(1.5)
P 		639.7
(0.3)
P 		270.9
(-3)
P 		667
avr 798
(2.3) 		851.2
(2.8) 		872.8
(3) 		826.4
(2.5) 		626.4
(0.6) 		255.3
(-3) 		618
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 260.2
(3)
P 		222.1
(2)
P 		184.3
(1)
P 		32.6
(-3)
P 		228
B 242.2
(3)
P 		230.2
(2.6)
P 		185.1
(1.3)
P 		37.3
(-3)
P 		205
C 289.8
(2.5)
P 		242.2
(1.5)
P 		311.4
(3)
P 		32.4
(-3)
P 		279
avr 264.1
(3) 		231.5
(2.1) 		226.9
(2) 		34.1
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 135.8
(-1.1)
P 		321.1
(3)
P 		206
(0.5)
P 		217.9
(0.7)
P 		191.1
(0.1)
P 		48.8
(-3)
P 		272
B 250.5
(3)
P 		250
(3)
P 		207.2
(1.2)
P 		225.5
(1.9)
P 		246.3
(2.8)
P 		109.9
(-3)
P 		141
C 347.4
(3)
P 		274.5
(1.3)
P 		208.5
(-0.2)
P 		154.6
(-1.5)
P 		207
(-0.3)
P 		90.7
(-3)
P 		257
avr 244.6
(1.9) 		281.9
(3) 		207.2
(0.7) 		199.3
(0.5) 		214.8
(1) 		83.1
(-3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194068_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.564
Sequence Type Exemplar sequence
Representative Public ID T23G11.6 NCBI
Target Description T23G11.6 /REP_DB=WormBase Gene ID /WP=CE14102 /TR=O02329 /GB=CAB03418.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Rat insulin-like growth factor binding protein complex acid labile chain like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059740(11), NM_001026467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059740 NCBI Caenorhabditis elegans T23G11.6 (T23G11.6) mRNA, complete cds. 11/11 None
NM_001026467 NCBI Caenorhabditis elegans T23G11.6b (T23G11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000027664 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7692552:7697473:-1 11/11 None
T23G11.6 ENSEMBL cdna:known chromosome:CEL140:I:7693009:7697530:-1 gene:T23G11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027646 4/11 Cross Hyb Matching Probes None
SNAP00000027647 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7693384-7697404(-) 99.8 100.0
Public Domain and Genome References
Gene Title Rat insulin-like growth factor binding protein complex acid labile chain like
Ensembl T23G11.6
Entrez Gene 172529 Entrez gene
SwissProt O02329 EMBL-EBI
WormBase CE14102 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03418 Hypothetical protein T23G11.6 [Caenorhabditis elegans] ref|NP_492141.1| T23G11.6 [Caenorhabditis elegans] 0.0
blast CAI70413 Hypothetical protein T23G11.6b [Caenorhabditis elegans] ref|NP_001021638.1| T23G11.6b [Caenorhabditis elegans] 0.0
blast CAE57362 Hypothetical protein CBG00306 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.43
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 5.1E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.15
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.029
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0020
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 5.6E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.067
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0038
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492141.1 1 587-609
NP_001021638.1 1 587-609
T23G11.6 1 587-609
GENEFINDER00000027664 1 587-609
Sequence
Target Sequence 
>C. ELEGANS:194068_S_AT
attgagtcactggatgtttcttcgaatccatatcgatgcgacggagaattggttaatttc
gtcttcggagtagaagatcgtgtcaaaaaggccgaagaaaatggaaattcattctttgtt
gcaaacacaaatgaaaccgtctgtgatcgtccttatacccttcgtggcgaacaaatactt
caagttgaggttgagaaatttcagccatacgatgaaaagagtgatacgacaactgctcca
tcgacaactacaacttcaacagttgaagagactaccacagaattgaaaattccagacctt
ctcgtgggaagcaggacaaatgatacattattcaaagaagagccacgcagagatgtatac
gatctttcaaaaacagatgacgcaaaaggtgtctacaatcaaaagggaacatatgctgtt
ccaatcacaattggagcaatcggtttggttactgtaattgtcattgttgctgtcgtttta
ttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGAGTCACTGGATGTTTCTTCGA 264 5 1354 Antisense
GTTTCTTCGAATCCATATCGATGCG 124 449 1369 Antisense
TCCTTATACCCTTCGTGGCGAACAA 635 591 1503 Antisense
GAGGTTGAGAAATTTCAGCCATACG 498 403 1540 Antisense
GTGATACGACAACTGCTCCATCGAC 98 485 1574 Antisense
CCAGACCTTCTCGTGGGAAGCAGGA 72 273 1645 Antisense
GAGCCACGCAGAGATGTATACGATC 259 385 1693 Antisense
AACATATGCTGTTCCAATCACAATT 507 137 1761 Antisense
ATTGGAGCAATCGGTTTGGTTACTG 611 1 1783 Antisense
GGTTACTGTAATTGTCATTGTTGCT 67 507 1800 Antisense
GTCATTGTTGCTGTCGTTTTATTTA 189 469 1813 Antisense
Sequence Source Affymetrix Proprietary Database