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[194067_at] Lectin C-type domain short and long forms, von Willebrand factor type A domain

Description F35C5.9 /REP_DB=WormBase Gene ID /WP=CE15950 /TR=O45445 /GB=CAB03059.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_high1_10_10 > 10      4grp_high_8_8 > 61      6grp_total > 50      4grp_total > 59      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1985
1 2 3 4 range
A 1381.4
(0.8)
P 		1726.7
(2.1)
P 		1967.2
(3)
P 		389.1
(-3)
M 		1578
B 1196.2
(-0.3)
P 		1449.7
(0.5)
P 		2281.5
(3)
P 		304.1
(-3)
P 		1977
C 1126.4
(0.1)
P 		1531.6
(1.7)
P 		1886.2
(3)
P 		296.2
(-3)
M 		1590
avr 1234.7
(0.2) 		1569.3
(1.3) 		2045
(3) 		329.8
(-3) 		1715

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 663.1
(3)
P 		421.2
(-2.1)
P 		396.6
(-2.6)
P 		607.2
(1.8)
P 		481.8
(-0.8)
P 		379.1
(-3)
P 		284
B 592.6
(3)
P 		381.9
(-1)
P 		587.8
(2.9)
P 		586.3
(2.9)
P 		531.5
(1.8)
P 		275.3
(-3)
M 		317
C 494.8
(0.8)
P 		555.6
(1.5)
P 		681.6
(3)
P 		603
(2.1)
P 		441.7
(0.2)
P 		175.5
(-3)
P 		506
avr 583.5
(2.7) 		452.9
(0.3) 		555.3
(2.2) 		598.8
(3) 		485
(0.9) 		276.6
(-3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 608
1 2 3 4 range
A 503
(2.9)
P 		374.8
(1.2)
P 		514.3
(3)
P 		57
(-3)
M 		457
B 381.5
(1.1)
P 		358
(0.8)
P 		528.7
(3)
P 		64.8
(-3)
P 		464
C 372.9
(0.2)
P 		440.3
(0.9)
P 		657.4
(3)
P 		49.9
(-3)
M 		608
avr 419.1
(1.3) 		391
(0.9) 		566.8
(3) 		57.2
(-3) 		510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 122.2
(0.2)
P 		149.8
(2.6)
P 		86.4
(-3)
P 		154
(3)
P 		145.4
(2.2)
P 		92.3
(-2.5)
P 		68
B 206.2
(2.5)
P 		127.1
(-1.7)
P 		142.7
(-0.9)
P 		155.3
(-0.2)
P 		215.9
(3)
P 		102.7
(-3)
M 		113
C 183.4
(3)
P 		169.5
(2.3)
P 		173.5
(2.5)
P 		121.3
(0)
P 		142.9
(1.1)
P 		58.7
(-3)
P 		125
avr 170.6
(3) 		148.8
(1.5) 		134.2
(0.5) 		143.5
(1.1) 		168.1
(2.8) 		84.6
(-3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3520
Sequence Type Exemplar sequence
Representative Public ID F35C5.9 NCBI
Target Description F35C5.9 /REP_DB=WormBase Gene ID /WP=CE15950 /TR=O45445 /GB=CAB03059.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064345 NCBI Caenorhabditis elegans F35C5.9 (F35C5.9) mRNA, complete cds. 11/11 None
SNAP00000007550 ENSEMBL cdna:SNAP chromosome:CEL140:II:12901229:12906442:1 11/11 None
GENEFINDER00000007555 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12904316:12907596:1 9/11 None
F35C5.9 ENSEMBL cdna:known chromosome:CEL140:II:12904316:12906442:1 gene:F35C5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12904312-12906439(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms, von Willebrand factor type A domain
Ensembl F35C5.9
Entrez Gene 174929 Entrez gene
SwissProt O45445 EMBL-EBI
WormBase CE15950 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03059 Hypothetical protein F35C5.9 [Caenorhabditis elegans] ref|NP_496746.1| F35C5.9 [Caenorhabditis elegans] 0.0
blast CAB03057 Hypothetical protein F35C5.8 [Caenorhabditis elegans] ref|NP_496745.1| F35C5.8 [Caenorhabditis elegans] 0.0
blast CAE60630 Hypothetical protein CBG04273 [Caenorhabditis briggsae] 1.0E-166
blast CAE60630 Hypothetical protein CBG04273 [Caenorhabditis briggsae] 1.0E-161
blast CAE60630 Hypothetical protein CBG04273 [Caenorhabditis briggsae] 1.0E-138
blast CAB03057 Hypothetical protein F35C5.8 [Caenorhabditis elegans] ref|NP_496745.1| F35C5.8 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.4E-24
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.5E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.5E-29
Sequence
Target Sequence 
>C. ELEGANS:194067_AT
ggcggttttggcaatcaactgcttctgccgtccgggatggatgcaatatcactacccact
gaaatccgataacatttactctaactacggtgtctgcctctaccgtccagacagtgccat
gactaaattcgccgctcaaagctattgccattccctcacaactaatggatatcttgtcag
cgagcttgaccaacagaagagagcgttcaattgggactacctcaactcgaagggaatcac
aatcaacgccttctacaacgggctcaccaactacaacggaacctggtggtgggatcagcc
gagcggccagccactgtggccattgaaccctaattcaggagcacctccacagcgatccgg
gtgtgttgtagacatgaagtattctgatggctcgatttcatggactccgatcagttgcac
aagcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGTTTTGGCAATCAACTGCTTC 533 541 714 Antisense
CTTCTGCCGTCCGGGATGGATGCAA 250 219 735 Antisense
ATATCACTACCCACTGAAATCCGAT 694 19 759 Antisense
TTACTCTAACTACGGTGTCTGCCTC 130 669 789 Antisense
TACCGTCCAGACAGTGCCATGACTA 595 649 814 Antisense
ATTCGCCGCTCAAAGCTATTGCCAT 497 9 840 Antisense
GTTCAATTGGGACTACCTCAACTCG 538 445 918 Antisense
GAATCACAATCAACGCCTTCTACAA 632 327 947 Antisense
GGCCAGCCACTGTGGCCATTGAACC 584 543 1018 Antisense
TGATGGCTCGATTTCATGGACTCCG 526 567 1098 Antisense
GACTCCGATCAGTTGCACAAGCTTT 146 375 1116 Antisense
Sequence Source Affymetrix Proprietary Database