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[194066_s_at] Lectin C-type domain short and long forms, von Willebrand factor type A domain

Description ZK666.7 /REP_DB=WormBase Gene ID /WP=CE02392 /TR=Q23565 /GB=CAA88986.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      6grp_highest_nonorm > 49      6grp_total > 74      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 174.6
(-1)
P 		285
(0.4)
P 		487.2
(3)
P 		17.6
(-3)
A 		470
B 183.3
(-0.9)
P 		311.7
(0.7)
P 		501.8
(3)
P 		6.4
(-3)
A 		495
C 164
(-1.1)
P 		258.7
(0.2)
P 		458.3
(3)
P 		23.2
(-3)
A 		435
avr 174
(-1) 		285.1
(0.5) 		482.4
(3) 		15.7
(-3) 		467

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7962
1 2 3 4 5 6 range
A 588.9
(-3)
P 		593.8
(-3)
P 		4035.9
(-0.4)
P 		8434.6
(3)
P 		5060.6
(0.4)
P 		3582.1
(-0.7)
P 		7846
B 473
(-3)
P 		592.9
(-2.9)
P 		4393.4
(0.5)
P 		7252.1
(3)
P 		5440.5
(1.4)
P 		3693.8
(-0.1)
P 		6779
C 496.8
(-3)
P 		599.7
(-2.9)
P 		4297.6
(-0.1)
P 		8395.9
(3)
P 		4885.3
(0.3)
P 		4227.9
(-0.2)
P 		7899
avr 519.6
(-3) 		595.5
(-2.9) 		4242.3
(-0) 		8027.5
(3) 		5128.8
(0.7) 		3834.6
(-0.4) 		7508
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 63.6
(-0.1)
P 		61.9
(-0.1)
P 		127.4
(3)
P 		2.6
(-3)
A 		125
B 58.5
(-0)
P 		77
(0.9)
P 		116.3
(3)
P 		1.4
(-3)
A 		115
C 54.3
(-1.1)
P 		74.4
(-0.3)
P 		159.7
(3)
P 		3.9
(-3)
A 		156
avr 58.8
(-0.4) 		71.1
(0.1) 		134.5
(3) 		2.6
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2102
1 2 3 4 5 6 range
A 108.6
(-3)
P 		211.2
(-2.7)
P 		878.9
(-0.7)
P 		2139.2
(3)
P 		1527.1
(1.2)
P 		872.1
(-0.7)
P 		2031
B 164.6
(-3)
P 		197.4
(-2.9)
P 		1066.8
(-0.4)
P 		1920.8
(2.2)
P 		2210.4
(3)
P 		1377.4
(0.6)
P 		2046
C 184.1
(-3)
P 		183
(-3)
P 		1093.8
(0.6)
P 		1688.4
(3)
P 		1580.8
(2.6)
P 		1415.3
(1.9)
P 		1505
avr 152.4
(-3) 		197.2
(-2.8) 		1013.2
(-0.1) 		1916.1
(3) 		1772.8
(2.5) 		1221.6
(0.6) 		1764
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194066_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3934
Sequence Type Exemplar sequence
Representative Public ID ZK666.7 NCBI
Target Description ZK666.7 /REP_DB=WormBase Gene ID /WP=CE02392 /TR=Q23565 /GB=CAA88986.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063859 NCBI Caenorhabditis elegans ZK666.7 (ZK666.7) mRNA, complete cds. 11/11 None
SNAP00000005238 ENSEMBL cdna:SNAP chromosome:CEL140:II:10488669:10490437:-1 11/11 None
GENEFINDER00000005251 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10488900:10490401:-1 11/11 None
ZK666.7 ENSEMBL cdna:known chromosome:CEL140:II:10488657:10490424:-1 gene:ZK666.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10488665-10490398(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms, von Willebrand factor type A domain
Ensembl ZK666.7
Entrez Gene 174613 Entrez gene
SwissProt Q23565 EMBL-EBI
WormBase CE02392 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88986 Hypothetical protein ZK666.7 [Caenorhabditis elegans] ref|NP_496260.1| ZK666.7 [Caenorhabditis elegans] 0.0
blast CAE59672 Hypothetical protein CBG03094 [Caenorhabditis briggsae] emb|CAE59670.1| Hypothetical protein CBG03092 [Caenorhabditis briggsae] 1.0E-163
blast CAA16338 Hypothetical protein Y39A1B.1 [Caenorhabditis elegans] ref|NP_499381.1| Y39A1B.1 [Caenorhabditis elegans] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.9E-26
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.9E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005238 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:194066_S_AT
ttaatggttttcttcgacagctctcacaaatcgctacgcccggatacaatttcacgaatc
aaaatggaatacagttggtccccgagcttagagctacaatggttcaagtcaactgctatt
gtccaaaccaatggttccaaatgcgtcagagctactccgacgagagctcgttaaaatacg
gagtctgcattcatccggtcactctaggagcaactagaactgcggcaaagttgtcttgca
gaaatcaatggaataatgcgtatatgatcaatgagtacactcagacaaaacatgatttta
cacttcaagttattgaaaacatcaccgcatttacacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATGGTTTTCTTCGACAGCTCTC 307 685 611 Antisense
TCGACAGCTCTCACAAATCGCTACG 681 601 624 Antisense
GCTACGCCCGGATACAATTTCACGA 501 301 643 Antisense
ATGGAATACAGTTGGTCCCCGAGCT 298 53 674 Antisense
TGGTCCCCGAGCTTAGAGCTACAAT 349 551 686 Antisense
AGTCAACTGCTATTGTCCAAACCAA 332 61 717 Antisense
CCAATGGTTCCAAATGCGTCAGAGC 383 277 738 Antisense
GCGTCAGAGCTACTCCGACGAGAGC 16 293 753 Antisense
TACGGAGTCTGCATTCATCCGGTCA 695 647 787 Antisense
TCATCCGGTCACTCTAGGAGCAACT 242 621 801 Antisense
GAAAACATCACCGCATTTACACAAC 396 355 925 Antisense
Sequence Source Affymetrix Proprietary Database