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[194065_at] Lectin C-type domain short and long forms, von Willebrand factor type A domain

Description ZK673.9 /REP_DB=WormBase Gene ID /WP=CE02395 /TR=Q23568 /GB=CAA88487.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_total > 08      4grp_total > 53      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 107.4
(1.8)
P 		120
(3)
A 		88.7
(0)
A 		56.8
(-3)
A 		63
B 166.9
(3)
P 		124
(0.9)
P 		88.6
(-0.9)
M 		46
(-3)
A 		121
C 126.7
(1.9)
A 		141.8
(3)
A 		71.2
(-2.2)
A 		59.7
(-3)
A 		82
avr 133.7
(3) 		128.6
(2.6) 		82.8
(-0.8) 		54.2
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 289.2
(3)
P 		79.3
(-1.5)
M 		41.6
(-2.3)
A 		104.6
(-0.9)
A 		53.7
(-2)
A 		7.3
(-3)
A 		282
B 199.5
(3)
P 		74.2
(-2.4)
A 		79.7
(-2.1)
A 		85.7
(-1.9)
A 		59.5
(-3)
A 		69.8
(-2.6)
A 		140
C 196.3
(3)
P 		117.8
(0.1)
P 		100.3
(-0.5)
A 		101.2
(-0.5)
A 		47.3
(-2.5)
A 		33.5
(-3)
A 		163
avr 228.3
(3) 		90.4
(-1.3) 		73.9
(-1.8) 		97.2
(-1.1) 		53.5
(-2.5) 		36.9
(-3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 39.1
(3)
P 		26.1
(0.5)
A 		23.2
(-0.1)
A 		8.3
(-3)
A 		31
B 53.2
(3)
P 		30.6
(-0.1)
P 		20.5
(-1.5)
M 		9.8
(-3)
A 		43
C 41.9
(3)
A 		40.8
(2.8)
A 		24.8
(-0.2)
A 		10.1
(-3)
A 		32
avr 44.7
(3) 		32.5
(0.9) 		22.8
(-0.7) 		9.4
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 53.3
(3)
P 		28.2
(0.1)
M 		9.1
(-2.1)
A 		26.5
(-0.1)
A 		16.2
(-1.3)
A 		1.8
(-3)
A 		52
B 69.4
(3)
P 		24.7
(-2.4)
A 		19.4
(-3)
A 		22.7
(-2.6)
A 		24.2
(-2.4)
A 		26
(-2.2)
A 		50
C 72.8
(3)
P 		35.9
(-0.6)
P 		25.5
(-1.6)
A 		20.4
(-2.1)
A 		15.3
(-2.6)
A 		11.2
(-3)
A 		62
avr 65.2
(3) 		29.6
(-1.1) 		18
(-2.4) 		23.2
(-1.8) 		18.6
(-2.4) 		13
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3980
Sequence Type Exemplar sequence
Representative Public ID ZK673.9 NCBI
Target Description ZK673.9 /REP_DB=WormBase Gene ID /WP=CE02395 /TR=Q23568 /GB=CAA88487.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063851 NCBI Caenorhabditis elegans ZK673.9 (ZK673.9) mRNA, complete cds. 11/11 None
ZK673.9 ENSEMBL cdna:known chromosome:CEL140:II:10468261:10470165:-1 gene:ZK673.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10468257-10470162(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms, von Willebrand factor type A domain
Ensembl ZK673.9
Entrez Gene 191390 Entrez gene
SwissProt Q23568 EMBL-EBI
WormBase CE02395 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88991 Hypothetical protein ZK673.9 [Caenorhabditis elegans] emb|CAA88487.1| Hypothetical protein ZK673.9 [Caenorhabditis elegans] ref|NP_496252.1| ZK673.9 [Caenorhabditis elegans] 0.0
blast CAE59678 Hypothetical protein CBG03101 [Caenorhabditis briggsae] 1.0E-146
blast CAE59676 Hypothetical protein CBG03099 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.9E-30
Sequence
Target Sequence 
>C. ELEGANS:194065_AT
gcacagatttctagtcctcaattcagtttagtggatgagatgaatacttctaaattggtt
aaacagttgacaacggcgctattgagcatcaactgcttctgcccagaaaactgggttcag
tttactggcaacggaactcaatacggagtttgtcttcgaggatttactgcaactggcgga
agttacggttaccaacatgccatcgattattgtgccagtgaagttaaaaatgctcactta
gcaaatgagttcagtcaggccaaacacgattttatgcaaattctcatggcaatttcgttc
cccaagtacaagccattggaatactacattggattacgtaacttgggaaatcagtggctc
tgggagcagcctcaaggccaggacatgattccgcttaatccactgatctattcaaagtgg
gctccaggatttccacaagcaaattctacgaaccaagttatttcgacacaaccattgcag
gagggatctactgatttcttctgggctccacctcagaccaatgattggctcttcatctgt
caagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAGATTTCTAGTCCTCAATTCA 689 315 625 Antisense
AGTTACGGTTACCAACATGCCATCG 211 63 805 Antisense
CATGCCATCGATTATTGTGCCAGTG 345 211 820 Antisense
TTCTCATGGCAATTTCGTTCCCCAA 2 691 905 Antisense
ATCAGTGGCTCTGGGAGCAGCCTCA 457 29 974 Antisense
CAAGGCCAGGACATGATTCCGCTTA 533 183 997 Antisense
ATTCCGCTTAATCCACTGATCTATT 353 9 1012 Antisense
GTGGGCTCCAGGATTTCCACAAGCA 303 487 1041 Antisense
AGGGATCTACTGATTTCTTCTGGGC 83 59 1106 Antisense
GCTCCACCTCAGACCAATGATTGGC 460 297 1129 Antisense
ATTGGCTCTTCATCTGTCAAGTTCA 439 3 1148 Antisense
Sequence Source Affymetrix Proprietary Database