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[194064_at] Lectin C-type domain short and long forms, von Willebrand factor type A domain

Description ZK666.3 /REP_DB=WormBase Gene ID /WP=CE16739 /TR=Q23561 /GB=CAA88988.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_high1_10_10 > 61      6grp_total > 40      4grp_total > 07      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 68
(3)
A 		34.5
(-1.7)
A 		61.2
(2)
A 		25.1
(-3)
A 		43
B 43.5
(2.7)
A 		34.9
(0.2)
A 		44.4
(3)
M 		24.4
(-3)
A 		20
C 29
(-3)
A 		42.8
(-1.8)
A 		37.9
(-2.2)
A 		98.9
(3)
A 		70
avr 46.8
(1.7) 		37.4
(-3) 		47.8
(2.2) 		49.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 114.1
(2.6)
A 		52.5
(-1.9)
P 		110.9
(2.4)
P 		119.9
(3)
P 		36.7
(-3)
A 		88.4
(0.7)
P 		83
B 29.6
(-3)
A 		95.6
(2.3)
P 		104
(3)
P 		68.4
(0.1)
A 		51.8
(-1.2)
P 		65.7
(-0.1)
P 		74
C 67.6
(-1.4)
P 		104.3
(0.5)
P 		83.6
(-0.6)
P 		151.7
(3)
P 		37.2
(-3)
M 		50.1
(-2.3)
P 		115
avr 70.4
(-0.6) 		84.1
(0.5) 		99.5
(1.8) 		113.3
(3) 		41.9
(-3) 		68.1
(-0.8) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 24.7
(3)
A 		7.5
(-1.9)
A 		16
(0.5)
A 		3.7
(-3)
A 		21
B 13.9
(3)
A 		8.6
(-0.7)
A 		10.3
(0.5)
M 		5.2
(-3)
A 		9
C 9.6
(-3)
A 		12.3
(-0.7)
A 		13.2
(0)
A 		16.7
(3)
A 		7
avr 16.1
(3) 		9.5
(-2.2) 		13.2
(0.7) 		8.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 21
(0.1)
A 		18.7
(-0.6)
P 		24.1
(1)
P 		30.4
(3)
P 		11.1
(-3)
A 		21.5
(0.2)
P 		19
B 10.3
(-3)
A 		31.8
(3)
P 		25.3
(1.2)
P 		18.1
(-0.8)
A 		21
(-0)
P 		24.5
(1)
P 		22
C 25.1
(1)
P 		31.8
(3)
P 		21.3
(-0.2)
P 		30.5
(2.6)
P 		12
(-3)
M 		16.8
(-1.5)
P 		20
avr 18.8
(-1.1) 		27.4
(3) 		23.6
(1.2) 		26.3
(2.5) 		14.7
(-3) 		20.9
(-0.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3096
Sequence Type Exemplar sequence
Representative Public ID ZK666.3 NCBI
Target Description ZK666.3 /REP_DB=WormBase Gene ID /WP=CE16739 /TR=Q23561 /GB=CAA88988.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063855 NCBI Caenorhabditis elegans ZK666.3 (ZK666.3) mRNA, complete cds. 11/11 None
SNAP00000005234 ENSEMBL cdna:SNAP chromosome:CEL140:II:10474131:10476049:-1 11/11 None
GENEFINDER00000005247 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10474131:10477094:-1 11/11 None
ZK666.3 ENSEMBL cdna:known chromosome:CEL140:II:10474131:10476049:-1 gene:ZK666.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10474127-10476046(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms, von Willebrand factor type A domain
Ensembl ZK666.3
Entrez Gene 191381 Entrez gene
SwissProt Q23561 EMBL-EBI
WormBase CE16739 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88988 Hypothetical protein ZK666.3 [Caenorhabditis elegans] ref|NP_496256.1| ZK666.3 [Caenorhabditis elegans] 0.0
blast CAA88991 Hypothetical protein ZK673.9 [Caenorhabditis elegans] emb|CAA88487.1| Hypothetical protein ZK673.9 [Caenorhabditis elegans] ref|NP_496252.1| ZK673.9 [Caenorhabditis elegans] 1.0E-118
blast CAE59678 Hypothetical protein CBG03101 [Caenorhabditis briggsae] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 8.4E-23
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 8.4E-23
Sequence
Target Sequence 
>C. ELEGANS:194064_AT
atgtgtgctactccagggtatgcttttgtcgatgaaatgaatacgtcaaagcttgtaaaa
caattgacaggtgctcttataaacattaactgcttctgcccagaagattgggttcaatac
acgggatcggataagaaaaaactaggagtttgtatcaagggattcgacttttccggttcc
gcatggggatatgaccatgctgttcaatattgtcagaaccaagtaagcagaggacatttg
gctaacgagttcagcaaggaaaagcatgacttcataaatctctacatgatgaatacattc
aatcgtgggatgcatcttgactactccattggactacgttatttaaattccacttgggtc
tgggaggagccaaagggacaaccaaaacttccgttgaatcctgatatttattcaacatgg
gcaccaggatacccacagaaaaactcaactgggcaagtagttggtgttaaagcgaatgga
attttgaccaattgggtgggcagtgcaacttcggaatggctgtttgtctgtcaggttcag
tcaagcagcacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGTGCTACTCCAGGGTATGCTT 589 49 622 Antisense
TATAAACATTAACTGCTTCTGCCCA 124 661 699 Antisense
CTTTTCCGGTTCCGCATGGGGATAT 618 217 789 Antisense
GGGGATATGACCATGCTGTTCAATA 493 497 806 Antisense
GAGGACATTTGGCTAACGAGTTCAG 596 403 851 Antisense
CGTGGGATGCATCTTGACTACTCCA 370 245 925 Antisense
ATTCCACTTGGGTCTGGGAGGAGCC 293 5 968 Antisense
ACATGGGCACCAGGATACCCACAGA 540 105 1036 Antisense
TTGGGTGGGCAGTGCAACTTCGGAA 476 697 1113 Antisense
ACTTCGGAATGGCTGTTTGTCTGTC 356 101 1129 Antisense
GTCAGGTTCAGTCAAGCAGCACAGA 512 465 1151 Antisense
Sequence Source Affymetrix Proprietary Database