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[194063_at] Lectin C-type domain short and long forms, von Willebrand factor type A domain

Description F35C5.7 /REP_DB=WormBase Gene ID /WP=CE15948 /TR=O45442 /GB=CAB03056.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_total > 23      4grp_total > 52      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 187
(2)
A 		221.3
(3)
A 		178.3
(1.7)
A 		21.4
(-3)
A 		200
B 190.5
(3)
A 		141.1
(1.4)
A 		144.5
(1.5)
A 		9
(-3)
A 		182
C 198.3
(1.9)
A 		239.8
(3)
A 		115.9
(-0.3)
A 		13.5
(-3)
A 		226
avr 191.9
(2.7) 		200.7
(3) 		146.2
(1.2) 		14.6
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 31.5
(-2.4)
A 		195.4
(3)
A 		130.4
(0.9)
A 		74.1
(-1)
A 		11.9
(-3)
A 		37.2
(-2.2)
A 		184
B 191.1
(3)
A 		115.6
(0.5)
A 		119.5
(0.6)
A 		108.4
(0.3)
A 		58
(-1.4)
A 		9.9
(-3)
A 		181
C 148.1
(3)
A 		124.7
(1.9)
A 		81.6
(-0)
A 		23.2
(-2.7)
A 		18.9
(-2.9)
A 		17.1
(-3)
A 		131
avr 123.6
(2) 		145.2
(3) 		110.5
(1.3) 		68.6
(-0.7) 		29.6
(-2.6) 		21.4
(-3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 68.1
(3)
A 		48
(1.1)
A 		46.6
(1)
A 		3.1
(-3)
A 		65
B 60.7
(3)
A 		34.9
(0.4)
A 		33.5
(0.2)
A 		1.9
(-3)
A 		59
C 65.6
(2.7)
A 		68.9
(3)
A 		40.4
(0.4)
A 		2.3
(-3)
A 		67
avr 64.8
(3) 		50.6
(1.6) 		40.2
(0.6) 		2.4
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 5.8
(-2.8)
A 		69.5
(3)
A 		28.4
(-0.7)
A 		18.8
(-1.6)
A 		3.6
(-3)
A 		9.1
(-2.5)
A 		66
B 66.5
(3)
A 		38.5
(0.3)
A 		29
(-0.6)
A 		28.7
(-0.6)
A 		23.5
(-1.1)
A 		3.7
(-3)
A 		63
C 54.9
(3)
A 		38.1
(1)
A 		20.8
(-1.1)
A 		4.7
(-3)
A 		6.1
(-2.8)
A 		5.7
(-2.9)
A 		50
avr 42.4
(2.1) 		48.7
(3) 		26.1
(-0.2) 		17.4
(-1.4) 		11.1
(-2.3) 		6.2
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3247
Sequence Type Exemplar sequence
Representative Public ID F35C5.7 NCBI
Target Description F35C5.7 /REP_DB=WormBase Gene ID /WP=CE15948 /TR=O45442 /GB=CAB03056.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064343 NCBI Caenorhabditis elegans F35C5.7 (F35C5.7) mRNA, complete cds. 11/11 None
SNAP00000007549 ENSEMBL cdna:SNAP chromosome:CEL140:II:12898187:12900299:1 11/11 None
GENEFINDER00000007557 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12895356:12903194:1 11/11 None
F35C5.7 ENSEMBL cdna:known chromosome:CEL140:II:12898187:12900299:1 gene:F35C5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12898183-12900296(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms, von Willebrand factor type A domain
Ensembl F35C5.7
Entrez Gene 185264 Entrez gene
SwissProt O45442 EMBL-EBI
WormBase CE15948 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03056 Hypothetical protein F35C5.7 [Caenorhabditis elegans] ref|NP_496744.1| F35C5.7 [Caenorhabditis elegans] 0.0
blast CAB03058 Hypothetical protein F35C5.6 [Caenorhabditis elegans] ref|NP_496743.1| F35C5.6 [Caenorhabditis elegans] 0.0
blast CAE60631 Hypothetical protein CBG04274 [Caenorhabditis briggsae] 0.0
blast CAB03058 Hypothetical protein F35C5.6 [Caenorhabditis elegans] ref|NP_496743.1| F35C5.6 [Caenorhabditis elegans] 1.0E-135
blast CAE60631 Hypothetical protein CBG04274 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.1E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.8E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.1E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007557 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:194063_AT
ccgtcgcttttgacccagatggagatgggctcctactgagcaagctctcaaaaatcgcat
caccaaatatgtcattcaagtctagagatcccaatttggtcggcaaaattcaggcagccg
ctcttcagacaaactgtttctgtccaagaacttggattcaatacaggccaagctatgacg
acgagaagtcttataaatttggaatttgcatccgagccgaaactataactgcatcatggg
caagtgcaaagatcgcttgccagaatagcattaaatatggttaccttgtaaccgagtttg
atgatcggaagcatgattttttgttcagaatagctctgaacaatgctgaattcactgaac
cttacgcttatcacaccgggttgagctatgtcaacggagcatggagatggcagcagccag
aaggacacccactcattttgcaaaatggaagttactcgcattggaatccaacatatccga
acaccccattcaccaacaccgttgtcgttaatcatcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCGCTTTTGACCCAGATGGAGA 512 265 545 Antisense
TGGGCTCCTACTGAGCAAGCTCTCA 196 555 570 Antisense
GGCAAAATTCAGGCAGCCGCTCTTC 7 535 646 Antisense
GCCGCTCTTCAGACAAACTGTTTCT 343 285 661 Antisense
TACAGGCCAAGCTATGACGACGAGA 42 645 706 Antisense
GAATTTGCATCCGAGCCGAAACTAT 540 325 746 Antisense
GAATTCACTGAACCTTACGCTTATC 565 323 892 Antisense
TACGCTTATCACACCGGGTTGAGCT 100 647 907 Antisense
ATGGCAGCAGCCAGAAGGACACCCA 624 51 951 Antisense
GGAATCCAACATATCCGAACACCCC 411 533 1007 Antisense
ACACCGTTGTCGTTAATCATCAGCA 435 107 1040 Antisense
Sequence Source Affymetrix Proprietary Database