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[194061_s_at]

Description C26C6.1 /REP_DB=WormBase Gene ID /WP=CE05310 /TR=Q18210 /GB=CAA96697.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=HMG (high mobility group) box, Bromodomain (5 domains), Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 01      6grp_total > 27      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1053
1 2 3 4 range
A 2269.2
(3)
P 		1646.5
(-0.8)
P 		1281.7
(-3)
P 		1475
(-1.8)
P 		988
B 2205
(3)
P 		1355.2
(-2.5)
P 		1283.3
(-3)
P 		1391.1
(-2.3)
P 		922
C 2248.6
(3)
P 		1404.9
(-1.9)
P 		1334.3
(-2.3)
P 		1216.7
(-3)
P 		1032
avr 2240.9
(3) 		1468.9
(-1.9) 		1299.8
(-3) 		1360.9
(-2.6) 		941

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2061
1 2 3 4 5 6 range
A 3041.9
(3)
P 		1977.6
(-0.2)
P 		1056.2
(-3)
P 		1318.7
(-2.2)
P 		1329.5
(-2.2)
P 		1938.1
(-0.3)
P 		1986
B 2445.3
(3)
P 		1844.3
(0.5)
P 		1476.3
(-1)
P 		1591.5
(-0.5)
P 		980.8
(-3)
P 		1607.5
(-0.4)
P 		1465
C 2281.9
(3)
P 		1844.1
(0.6)
P 		1787.8
(0.3)
P 		1374.7
(-2)
P 		1198.7
(-3)
P 		1714.5
(-0.1)
P 		1083
avr 2589.7
(3) 		1888.7
(0) 		1440.1
(-1.9) 		1428.3
(-1.9) 		1169.7
(-3) 		1753.4
(-0.5) 		1420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 826.2
(3)
P 		357.4
(-1.6)
P 		335.1
(-1.8)
P 		215.9
(-3)
P 		610
B 703.2
(3)
P 		334.7
(-2.4)
P 		297.4
(-3)
P 		296.4
(-3)
P 		407
C 744.3
(3)
P 		403.9
(-0.8)
P 		465.1
(-0.1)
P 		205.2
(-3)
P 		539
avr 757.9
(3) 		365.3
(-1.5) 		365.9
(-1.5) 		239.2
(-3) 		519

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 560.8
(1.2)
P 		703.3
(3)
P 		230
(-3)
P 		334.5
(-1.7)
P 		401.2
(-0.8)
P 		471.9
(0.1)
P 		473
B 850.9
(3)
P 		613.9
(0.1)
P 		358.5
(-3)
P 		421.5
(-2.2)
P 		398.5
(-2.5)
P 		599.4
(-0.1)
P 		492
C 845.8
(3)
P 		562.7
(0)
P 		455
(-1.1)
P 		276.5
(-3)
P 		387.9
(-1.8)
P 		574
(0.1)
P 		569
avr 752.5
(3) 		626.6
(1.1) 		347.8
(-2.9) 		344.2
(-3) 		395.9
(-2.2) 		548.4
(0) 		408
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194061_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.603
Sequence Type Exemplar sequence
Representative Public ID C26C6.1 NCBI
Target Description C26C6.1 /REP_DB=WormBase Gene ID /WP=CE05310 /TR=Q18210 /GB=CAA96697.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=HMG (high mobility group) box, Bromodomain (5 domains), Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025837(11), NM_001025838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025837 NCBI Caenorhabditis elegans C26C6.1a (C26C6.1) mRNA, complete cds. 11/11 None
NM_001025838 NCBI Caenorhabditis elegans C26C6.1b (C26C6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000003882 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7504528:7511361:1 11/11 None
SNAP00000003865 ENSEMBL cdna:SNAP chromosome:CEL140:I:7509508:7511361:1 11/11 None
C26C6.1 ENSEMBL cdna:known chromosome:CEL140:I:7503565:7511708:1 gene:C26C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7503500-7511292(+) 98.42 100.0
Public Domain and Genome References
Ensembl C26C6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96600 Hypothetical protein C26C6.1a [Caenorhabditis elegans] emb|CAA96697.2| Hypothetical protein C26C6.1a [Caenorhabditis elegans] ref|NP_001021008.1| C26C6.1a [Caenorhabditis elegans] 0.0
blast CAE66555 Hypothetical protein CBG11867 [Caenorhabditis briggsae] 0.0
blast CAC70156 polybromodomain protein [Brugia malayi] 0.0
blast CAI79155 Hypothetical protein C26C6.1b [Caenorhabditis elegans] ref|NP_001021009.1| C26C6.1b [Caenorhabditis elegans] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 6.0E-14
Pfam IPR001025 EMBL-EBI Bromo adjacent region 8.9E-39
Pfam IPR001025 EMBL-EBI Bromo adjacent region 3.3E-31
Pfam IPR001487 EMBL-EBI Bromodomain 2.4E-27
Pfam IPR001487 EMBL-EBI Bromodomain 2.9E-31
Pfam IPR001487 EMBL-EBI Bromodomain 1.1E-30
Pfam IPR001487 EMBL-EBI Bromodomain 5.0E-33
Pfam IPR001487 EMBL-EBI Bromodomain 2.4E-37
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 6.0E-14
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 6.0E-14
Pfam IPR001025 EMBL-EBI Bromo adjacent region 8.9E-39
Pfam IPR001025 EMBL-EBI Bromo adjacent region 3.3E-31
Pfam IPR001487 EMBL-EBI Bromodomain 1.1E-30
Pfam IPR001487 EMBL-EBI Bromodomain 5.0E-33
Pfam IPR001487 EMBL-EBI Bromodomain 2.4E-37
Sequence
Target Sequence 
>C. ELEGANS:194061_S_AT
acaggcatcctgttagccaacaaatgcatcatcagcatccacagcatatgcagcaacatc
acgatcatcatccacatcagcagcattatcagcaaggtggccaacctcatccacagatgc
aaatgggaccaccacaaaacggaatgttccaacaaggatcttcttcatctcaacaatatc
atcaggcaccacctcaacaaatgattcaacaacaacatcaacaacctggtccacctccac
aacagcaacaaccacaaatgcaacctatcgtggttacagatgttggacgaactgtagttc
gagcagttgtacctgcatttgttgcaccaccgaatcaaattcattcgagaagagttctac
attcggaagcatatctcaagtatatcgaatcacttgcccagaatcgacagaagtcggtaa
gccgatgggaacgaactctaggagcaactgccaggaatacccaaccagctggaaatgccc
gcgctccatctcattggataaggagaattgaaaacggacgacctgtagctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGGCATCCTGTTAGCCAACAAAT 581 107 5030 Antisense
GCATCATCAGCATCCACAGCATATG 553 307 5055 Antisense
CAACATCACGATCATCATCCACATC 1 189 5083 Antisense
CATCAGGCACCACCTCAACAAATGA 443 211 5209 Antisense
TGCATTTGTTGCACCACCGAATCAA 227 579 5343 Antisense
GAATCACTTGCCCAGAATCGACAGA 548 327 5416 Antisense
GCCGATGGGAACGAACTCTAGGAGC 318 285 5450 Antisense
GAGCAACTGCCAGGAATACCCAACC 171 391 5471 Antisense
TACCCAACCAGCTGGAAATGCCCGC 689 643 5487 Antisense
CCGCGCTCCATCTCATTGGATAAGG 320 263 5508 Antisense
TGAAAACGGACGACCTGTAGCTCGC 365 573 5538 Antisense
Sequence Source Affymetrix Proprietary Database