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[194060_s_at]

Description T01D3.6B /REP_DB=WormBase Gene ID /WP=CE18164 /TR=O02364 /GB=CAB03263.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EGF-like domain, Fibrinogen beta and gamma chains, C-terminal globular domain
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 46      6grp_total > 54      4grp_total > 61      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2903
1 2 3 4 range
A 3132.5
(3)
P 		2488.1
(1.6)
P 		2178.2
(1)
P 		328.2
(-3)
P 		2804
B 3230.9
(3)
P 		2395.7
(1.3)
P 		2540.5
(1.6)
P 		365.9
(-3)
P 		2865
C 2933.8
(3)
P 		2211.2
(1.3)
P 		2149.1
(1.2)
P 		364.5
(-3)
P 		2569
avr 3099.1
(3) 		2365
(1.4) 		2289.3
(1.2) 		352.9
(-3) 		2746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1636
1 2 3 4 5 6 range
A 2927.9
(1.8)
P 		2603.3
(-0.8)
P 		3084.8
(3)
P 		2931.1
(1.8)
P 		2316.7
(-3)
P 		2722.7
(0.2)
P 		768
B 2282.9
(-1.4)
P 		2575.5
(-0.1)
P 		3232.3
(3)
P 		2666.7
(0.4)
P 		1951.3
(-3)
P 		2521.7
(-0.3)
P 		1281
C 2614.3
(-1.4)
P 		2577.2
(-1.6)
P 		3587.6
(3)
P 		3186.3
(1.2)
P 		2265.8
(-3)
P 		2867.1
(-0.3)
P 		1322
avr 2608.4
(-0.7) 		2585.3
(-0.8) 		3301.6
(3) 		2928
(1) 		2177.9
(-3) 		2703.8
(-0.2) 		1124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1093
1 2 3 4 range
A 1140.5
(3)
P 		540.1
(-0.3)
P 		569.4
(-0.1)
P 		48
(-3)
P 		1093
B 1030.3
(3)
P 		591.7
(0.2)
P 		588.7
(0.2)
P 		78
(-3)
P 		952
C 971.2
(3)
P 		635.7
(0.8)
P 		749
(1.5)
P 		61.5
(-3)
P 		910
avr 1047.3
(3) 		589.2
(0.2) 		635.7
(0.5) 		62.5
(-3) 		985

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 539.7
(-3)
P 		925.9
(3)
P 		671.8
(-0.9)
P 		743.4
(0.2)
P 		699.1
(-0.5)
P 		662.9
(-1.1)
P 		386
B 794.3
(-0.7)
P 		857.3
(0.9)
P 		784.9
(-1)
P 		706.3
(-3)
P 		792.8
(-0.8)
P 		940.3
(3)
P 		234
C 969
(3)
P 		786.4
(-0.3)
P 		913.1
(2)
P 		640.8
(-3)
P 		733.2
(-1.3)
P 		959.8
(2.8)
P 		328
avr 767.7
(-0.3) 		856.5
(3) 		789.9
(0.5) 		696.8
(-3) 		741.7
(-1.3) 		854.3
(2.9) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194060_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14693
Sequence Type Exemplar sequence
Representative Public ID T01D3.6B NCBI
Target Description T01D3.6B /REP_DB=WormBase Gene ID /WP=CE18164 /TR=O02364 /GB=CAB03263.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EGF-like domain, Fibrinogen beta and gamma chains, C-terminal globular domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073993(11), NM_073994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073993 NCBI Caenorhabditis elegans T01D3.6a (T01D3.6) mRNA, complete cds. 11/11 None
NM_073994 NCBI Caenorhabditis elegans T01D3.6b (T01D3.6) mRNA, complete cds. 11/11 None
T01D3.6a ENSEMBL cdna:known chromosome:CEL140:V:13719439:13722992:1 gene:T01D3.6 11/11 None
T01D3.6b ENSEMBL cdna:known chromosome:CEL140:V:13719459:13722878:1 gene:T01D3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032225 3/11 Cross Hyb Matching Probes None
GENEFINDER00000032240 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13719458-13722878(+) 100.0 100.0
Public Domain and Genome References
Ensembl T01D3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03262 Hypothetical protein T01D3.6a [Caenorhabditis elegans] emb|CAB04279.1| Hypothetical protein T01D3.6a [Caenorhabditis elegans] ref|NP_506394.1| T01D3.6a [Caenorhabditis elegans] 0.0
blast CAB03263 Hypothetical protein T01D3.6b [Caenorhabditis elegans] emb|CAB04280.1| Hypothetical protein T01D3.6b [Caenorhabditis elegans] ref|NP_506395.1| T01D3.6b [Caenorhabditis elegans] 0.0
blast CAE66257 Hypothetical protein CBG11501 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-6
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.5E-16
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 6.9E-32
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 1.4E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-6
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 5.5E-16
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 1.4E-8
Sequence
Target Sequence 
>C. ELEGANS:194060_S_AT
gcaactcaatctgtgtggcttggactcgagttcattcaccaacttaccacctatcagcca
caaaatcttcgtttgaacctcttcagatgtgccagcaacggacgcccatcccttactact
gattgtacatacccaacattcagtgttcttgactctaccactcaatactctgtggtgatc
cgtgaggcttgtaccggatctgaagctgatgagcattactatcaagatggttgggcaaga
tgggatttgactcagaatggaccaaagttctccacctgggatattgaagcacagaccaca
attccaccaacattgagagccaagatggagggcgatgcaatttactacacatgttccaag
tccaacttcaacactggatggtggtatgtcgaggatcaactttgtggagctgccaacttg
aacggtgtccgatacacatgcccagttattccagttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTCAATCTGTGTGGCTTGGAC 233 319 2206 Antisense
TGGCTTGGACTCGAGTTCATTCACC 354 545 2221 Antisense
ACCACCTATCAGCCACAAAATCTTC 646 83 2251 Antisense
TTGAACCTCTTCAGATGTGCCAGCA 352 705 2278 Antisense
CCCATCCCTTACTACTGATTGTACA 139 259 2310 Antisense
AACATTCAGTGTTCTTGACTCTACC 127 139 2340 Antisense
TGACTCTACCACTCAATACTCTGTG 574 569 2355 Antisense
CTGTGGTGATCCGTGAGGCTTGTAC 153 241 2375 Antisense
GACCAAAGTTCTCCACCTGGGATAT 403 383 2465 Antisense
GGAGCTGCCAACTTGAACGGTGTCC 407 521 2611 Antisense
TACACATGCCCAGTTATTCCAGTTG 144 643 2638 Antisense
Sequence Source Affymetrix Proprietary Database