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[194059_at] ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)

Description F08A8.2 /REP_DB=WormBase Gene ID /WP=CE17634 /TR=O62137 /GB=CAB16864.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 81      6grp_total > 63      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4101
1 2 3 4 range
A 55.1
(-3)
P 		1137.2
(-1)
P 		3270.6
(3)
P 		173.4
(-2.8)
P 		3216
B 72
(-3)
P 		1445.3
(-1)
P 		4138.1
(3)
P 		112.5
(-2.9)
P 		4066
C 37.3
(-3)
P 		1426.8
(-0.7)
P 		3733.4
(3)
P 		200.3
(-2.7)
P 		3696
avr 54.8
(-3) 		1336.4
(-0.9) 		3714
(3) 		162.1
(-2.8) 		3659

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 484
1 2 3 4 5 6 range
A 120.9
(-3)
P 		138
(-2.8)
P 		536.5
(3)
P 		389.6
(0.9)
P 		253.8
(-1.1)
P 		139.9
(-2.7)
P 		416
B 73.3
(-3)
P 		119.3
(-2.4)
P 		512.7
(3)
P 		364.4
(1)
P 		222.8
(-1)
P 		138.2
(-2.1)
P 		439
C 52.6
(-3)
P 		165.4
(-1.6)
P 		535.4
(3)
P 		349.9
(0.7)
P 		246.7
(-0.6)
P 		111.5
(-2.3)
P 		483
avr 82.3
(-3) 		140.9
(-2.2) 		528.2
(3) 		368
(0.8) 		241.1
(-0.9) 		129.9
(-2.4) 		446
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1289
1 2 3 4 range
A 20.1
(-3)
P 		246.8
(-1.4)
P 		855
(3)
P 		25.4
(-3)
P 		835
B 23
(-3)
P 		356.9
(-0.9)
P 		958.9
(3)
P 		24
(-3)
P 		936
C 12.4
(-3)
P 		410.2
(-1.1)
P 		1301.2
(3)
P 		33.8
(-2.9)
P 		1289
avr 18.5
(-3) 		338
(-1.1) 		1038.4
(3) 		27.7
(-2.9) 		1020

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 22.3
(-3)
P 		49.1
(-1.3)
P 		116.8
(3)
P 		98.8
(1.9)
P 		76.6
(0.4)
P 		34.1
(-2.3)
P 		95
B 25.5
(-3)
P 		39.7
(-2.1)
P 		124.5
(3)
P 		96.5
(1.3)
P 		90.5
(0.9)
P 		51.5
(-1.4)
P 		99
C 19.5
(-3)
P 		50.5
(-1.4)
P 		136.3
(3)
P 		70.4
(-0.4)
P 		79.8
(0.1)
P 		37.3
(-2.1)
P 		117
avr 22.4
(-3) 		46.4
(-1.6) 		125.9
(3) 		88.6
(0.8) 		82.3
(0.5) 		41
(-1.9) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1080
Sequence Type Exemplar sequence
Representative Public ID F08A8.2 NCBI
Target Description F08A8.2 /REP_DB=WormBase Gene ID /WP=CE17634 /TR=O62137 /GB=CAB16864.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060861 NCBI Caenorhabditis elegans F08A8.2 (F08A8.2) mRNA, complete cds. 11/11 None
SNAP00000032480 ENSEMBL cdna:SNAP chromosome:CEL140:I:12950428:12954650:1 11/11 None
F08A8.2 ENSEMBL cdna:known chromosome:CEL140:I:12950400:12954682:1 gene:F08A8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032491 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12950358-12954581(+) 100.0 100.0
Public Domain and Genome References
Gene Title ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Ensembl F08A8.2
Entrez Gene 173163 Entrez gene
SwissProt O62137 EMBL-EBI
WormBase CE17634 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6635 fatty acid beta-oxidation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5777 peroxisome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3997 acyl-CoA oxidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16864 Hypothetical protein F08A8.2 [Caenorhabditis elegans] ref|NP_493262.1| F08A8.2 [Caenorhabditis elegans] 0.0
blast CAB16865 Hypothetical protein F08A8.3 [Caenorhabditis elegans] ref|NP_493263.1| F08A8.3 [Caenorhabditis elegans] 0.0
blast CAB16866 Hypothetical protein F08A8.4 [Caenorhabditis elegans] ref|NP_493264.1| F08A8.4 [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 2.0E-86
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 7.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 1.7E-70
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 1.7E-70
Sequence
Target Sequence 
>C. ELEGANS:194059_AT
atcaaggccggtaaagctaagaaattaggaccagtggcatcatatctagcagacaagagt
gatgaaactgatctaaccagcctgaatggatatgtaaagatgttcgagaacatggctaga
aggcaggcttggaaagcaacagagaaattcttgaaattgatggaaagtggggaatcaaga
gaagtggcatggaataaatcagcagtggagttgactagagctagccgtctacacacccgt
ctattcataatcgaagcttttatgagaagagtgtctcgaattgaagatattccagtgaaa
gaggttctaacagatcttctccatcttcatgtcaactatgaactattggatgttgccacg
tatgcactggaattcatgtcattcactcagttggattatgttagagatcaactatatttg
tatctggagaagattcgaccaaatgcagtatctctagttgactcttttcagattagtgat
atgcaattgagatctgtccttggccgccgggatggtcacgtctacgagaatctcttcaaa
tgggcaaagtcaagtcccttgaacaacgcagatgttctaccgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGGCCGGTAAAGCTAAGAAAT 543 25 1423 Antisense
AGGACCAGTGGCATCATATCTAGCA 690 55 1449 Antisense
CAGTGGCATCATATCTAGCAGACAA 236 209 1454 Antisense
GATGAAACTGATCTAACCAGCCTGA 563 411 1483 Antisense
GATCTAACCAGCCTGAATGGATATG 392 417 1492 Antisense
GTTCGAGAACATGGCTAGAAGGCAG 137 443 1524 Antisense
GGATGGTCACGTCTACGAGAATCTC 196 515 1932 Antisense
AATCTCTTCAAATGGGCAAAGTCAA 565 167 1951 Antisense
AATGGGCAAAGTCAAGTCCCTTGAA 236 151 1961 Antisense
TCAAGTCCCTTGAACAACGCAGATG 315 633 1972 Antisense
GAACAACGCAGATGTTCTACCGTCA 83 353 1983 Antisense
Sequence Source Affymetrix Proprietary Database