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[194057_at]

Description F08A8.1 /REP_DB=WormBase Gene ID /WP=CE17633 /TR=O62140 /GB=CAB16867.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 10      6grp_total > 37      4grp_total > 0      6grp_highest_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3824
1 2 3 4 range
A 954.7
(-2.6)
P 		703.3
(-3)
P 		1539.9
(-1.7)
P 		4496.9
(3)
P 		3794
B 993.7
(-2.8)
P 		854.9
(-3)
P 		1461.4
(-2)
P 		4527.2
(3)
P 		3672
C 1040.2
(-2.6)
P 		809.9
(-3)
P 		1557.2
(-1.7)
P 		4206.5
(3)
P 		3397
avr 996.2
(-2.7) 		789.4
(-3) 		1519.5
(-1.8) 		4410.2
(3) 		3621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1412
1 2 3 4 5 6 range
A 1997.9
(3)
P 		1273.5
(-1.1)
P 		1309.8
(-0.9)
P 		943.4
(-3)
P 		991.1
(-2.7)
P 		1513.5
(0.2)
P 		1055
B 2201.9
(3)
P 		1530.2
(-0.3)
P 		1084
(-2.5)
P 		1432.6
(-0.8)
P 		980.4
(-3)
P 		1692
(0.5)
P 		1222
C 1775
(3)
P 		1568.1
(1.7)
P 		1135.3
(-0.9)
P 		1128.8
(-0.9)
P 		789.6
(-3)
P 		1427.5
(0.9)
P 		985
avr 1991.6
(3) 		1457.3
(0) 		1176.4
(-1.6) 		1168.3
(-1.6) 		920.4
(-3) 		1544.3
(0.5) 		1071
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 347.6
(-0.7)
P 		152.7
(-3)
P 		402.6
(-0)
P 		658.3
(3)
P 		506
B 316.9
(-2.2)
P 		211.1
(-3)
P 		338.6
(-2)
P 		964.8
(3)
P 		754
C 344.3
(-1.6)
P 		232.8
(-3)
P 		542.7
(0.9)
P 		709.3
(3)
P 		477
avr 336.3
(-1.6) 		198.9
(-3) 		428
(-0.6) 		777.5
(3) 		579

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 368.3
(0.6)
P 		452.9
(3)
P 		285.2
(-1.7)
P 		239.3
(-3)
P 		299.1
(-1.3)
P 		368.5
(0.6)
P 		214
B 766.2
(3)
P 		509.3
(-0.1)
P 		263.2
(-3)
P 		379.4
(-1.6)
P 		398.3
(-1.4)
P 		630.9
(1.4)
P 		503
C 657.9
(3)
P 		478.5
(0.5)
P 		288.9
(-2.1)
P 		227
(-3)
P 		255.5
(-2.6)
P 		477.9
(0.5)
P 		431
avr 597.5
(3) 		480.2
(0.8) 		279.1
(-3) 		281.9
(-2.9) 		317.6
(-2.3) 		492.4
(1) 		318
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.977
Sequence Type Exemplar sequence
Representative Public ID F08A8.1 NCBI
Target Description F08A8.1 /REP_DB=WormBase Gene ID /WP=CE17633 /TR=O62140 /GB=CAB16867.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025918(11), NM_001025919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025918 NCBI Caenorhabditis elegans F08A8.1a (F08A8.1) mRNA, complete cds. 11/11 None
NM_001025919 NCBI Caenorhabditis elegans F08A8.1b (F08A8.1) mRNA, complete cds. 11/11 None
SNAP00000032479 ENSEMBL cdna:SNAP chromosome:CEL140:I:12946682:12950240:1 11/11 None
GENEFINDER00000032485 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12946682:12950240:1 11/11 None
F08A8.1a.2 ENSEMBL cdna:known chromosome:CEL140:I:12946675:12950329:1 gene:F08A8.1 11/11 None
F08A8.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:12946681:12950332:1 gene:F08A8.1 11/11 None
F08A8.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:12946852:12950240:1 gene:F08A8.1 11/11 None
F08A8.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:12946998:12950240:1 gene:F08A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12946612-12950171(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08A8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16867 Hypothetical protein F08A8.1a [Caenorhabditis elegans] ref|NP_001021089.1| F08A8.1a [Caenorhabditis elegans] 0.0
blast CAE63476 Hypothetical protein CBG07943 [Caenorhabditis briggsae] 0.0
blast CAE54894 Hypothetical protein F08A8.1b [Caenorhabditis elegans] ref|NP_001021090.1| F08A8.1b [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 8.0E-88
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 6.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 2.9E-70
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 2.9E-70
Sequence
Target Sequence 
>C. ELEGANS:194057_AT
gcctacttgggcgccagaagtgagccaactagcctgatagatagagttccaaatggtgga
atcacggaatacatcaagacattccaacatatcgcaaagagacagacgttgaaggctgcc
aacaagttcttcggattaatggagaatggagaaaagagagaaatcgcctggaacaagtca
tccgtggagttgaatagggcgagtcgcctccacacccgcctcttcatcgtcgaagccttt
gccagacgagtcaacgaaatcggagatatcaccatcaaagaggctctcagcgatctcctc
catcttcacgtcaactatgaacttttggatgttgccacgtatgcactggaagatggattc
atgtcatccactcagttggattatgtcagagatcaattgtacttctatctccagaaaatt
cgaccaaacgcagtttcattgctagattcctgggagtttagtgatagagagctgagatct
gtcctaggccgccgtgatggtcatgtctacgagaaccttttcaagtgggcaaaggaaagt
ccgttgaacaagacagatgttcttccgtcagtggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTACTTGGGCGCCAGAAGTGAGC 243 283 1414 Antisense
GAAGTGAGCCAACTAGCCTGATAGA 593 335 1430 Antisense
AAGGCTGCCAACAAGTTCTTCGGAT 658 161 1525 Antisense
ATCGCCTGGAACAAGTCATCCGTGG 56 39 1576 Antisense
TGAATAGGGCGAGTCGCCTCCACAC 25 577 1604 Antisense
TTCATCGTCGAAGCCTTTGCCAGAC 471 687 1636 Antisense
TCAAAGAGGCTCTCAGCGATCTCCT 541 627 1688 Antisense
GATCAATTGTACTTCTATCTCCAGA 69 423 1804 Antisense
AGAGAGCTGAGATCTGTCCTAGGCC 92 69 1879 Antisense
CCGCCGTGATGGTCATGTCTACGAG 175 263 1902 Antisense
GACAGATGTTCTTCCGTCAGTGGAT 92 369 1965 Antisense
Sequence Source Affymetrix Proprietary Database