[Home] | [Total List]

[194056_s_at]

Description F35C5.5B /REP_DB=WormBase Gene ID /WP=CE15946 /TR=O45440 /GB=CAB03054.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 54      6grp_total > 71      4grp_total > 06      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 1663.5
(0.2)
P 		1690.6
(1.3)
P 		1583.9
(-3)
P 		1731.4
(3)
P 		148
B 1566.1
(0.8)
P 		1275.5
(-3)
P 		1476.6
(-0.4)
P 		1734.7
(3)
P 		459
C 1646.5
(1.7)
P 		1266.9
(-3)
P 		1579.7
(0.9)
P 		1748
(3)
P 		481
avr 1625.4
(0.9) 		1411
(-3) 		1546.7
(-0.5) 		1738
(3) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 957
1 2 3 4 5 6 range
A 1156.2
(-0.7)
P 		1450.9
(1.3)
P 		1314.1
(0.4)
P 		1703.4
(3)
P 		1228.6
(-0.2)
P 		808.4
(-3)
P 		895
B 1318
(1.3)
P 		1287.3
(1.1)
P 		1338
(1.5)
P 		1389.4
(2)
P 		1507.3
(3)
P 		829.6
(-3)
P 		678
C 1197
(0.2)
P 		1236.1
(0.5)
P 		1489.5
(2.3)
P 		1581.4
(3)
P 		1349.4
(1.3)
P 		746.9
(-3)
P 		835
avr 1223.7
(0.4) 		1324.8
(1.2) 		1380.5
(1.6) 		1558.1
(3) 		1361.8
(1.5) 		795
(-3) 		763
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 605.7
(3)
P 		367
(-1.1)
P 		414.1
(-0.3)
P 		253.5
(-3)
P 		352
B 499.4
(3)
P 		315
(-3)
P 		342.2
(-2.1)
P 		369.7
(-1.2)
P 		184
C 545
(2.9)
P 		364.2
(-1.4)
P 		550.6
(3)
P 		294.7
(-3)
P 		256
avr 550
(3) 		348.7
(-2) 		435.6
(0.2) 		306
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 213.1
(-2.7)
P 		516
(3)
P 		286.2
(-1.3)
P 		432
(1.4)
P 		370.7
(0.3)
P 		196.8
(-3)
P 		319
B 458.6
(-0)
P 		428.5
(-0.6)
P 		324.9
(-2.7)
P 		368
(-1.8)
P 		612.4
(3)
P 		309.3
(-3)
P 		303
C 443.7
(3)
P 		377.2
(0.9)
P 		379.1
(1)
P 		318
(-0.9)
P 		436.7
(2.8)
P 		250
(-3)
P 		194
avr 371.8
(0.2) 		440.6
(2.1) 		330.1
(-0.9) 		372.7
(0.3) 		473.3
(3) 		252
(-3) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194056_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2673
Sequence Type Exemplar sequence
Representative Public ID F35C5.5B NCBI
Target Description F35C5.5B /REP_DB=WormBase Gene ID /WP=CE15946 /TR=O45440 /GB=CAB03054.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064341(11), NM_064340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064341 NCBI Caenorhabditis elegans F35C5.5b (F35C5.5) mRNA, complete cds. 11/11 None
NM_064340 NCBI Caenorhabditis elegans F35C5.5a (F35C5.5) mRNA, complete cds. 11/11 None
SNAP00000007546 ENSEMBL cdna:SNAP chromosome:CEL140:II:12893049:12894995:-1 10/11 None
GENEFINDER00000007553 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12892993:12894995:-1 11/11 None
F35C5.5b ENSEMBL cdna:known chromosome:CEL140:II:12892962:12894995:-1 gene:F35C5.5 11/11 None
F35C5.5a ENSEMBL cdna:known chromosome:CEL140:II:12892995:12894995:-1 gene:F35C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12893045-12894992(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35C5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03054 Hypothetical protein F35C5.5b [Caenorhabditis elegans] ref|NP_496742.1| F35C5.5b [Caenorhabditis elegans] 0.0
blast CAB03055 Hypothetical protein F35C5.5a [Caenorhabditis elegans] ref|NP_496741.1| F35C5.5a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.4E-36
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.2E-17
Sequence
Target Sequence 
>C. ELEGANS:194056_S_AT
catcgcaactgtcgcttttgatcagactggagatgaagagatgatcaagctgattggaga
aattgcgacgccgggtttcaattttacgaatgaagatgaaaatctggttaaggaaattca
aactgcaatgattcagaccaactgctactgctcaaacctttggactcaataccgagaaac
attcgaggaccctcattcttcaaaattcggagtttgcctgcgcccggtggctctgacagc
tggctggaccccagcaaagtttgcgtgtcagaatatgatccagacggggtacatggtcac
cgagtatgatcagaagaagcatgactatgttttcaaacttgtccgcaacgacacttcatt
ccccgagccctatgtgtatcacatcggactgagctatgtgaatggaggatatgcgtggca
acaacctgtgggtcacgcgttggtgccgcttaacgatagcctatggaatccaggattccc
tacacaatcatctacgaccaccgccgtcctcaatcagcaatccagcagtgctttcagagt
gggatggcagaatgtcaaccagtatacggtgtccgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGCAACTGTCGCTTTTGATCAG 409 211 549 Antisense
TGCGACGCCGGGTTTCAATTTTACG 126 573 612 Antisense
GCTACTGCTCAAACCTTTGGACTCA 163 303 692 Antisense
GGACCCTCATTCTTCAAAATTCGGA 638 523 735 Antisense
GCTGGACCCCAGCAAAGTTTGCGTG 227 289 791 Antisense
GACGGGGTACATGGTCACCGAGTAT 52 377 831 Antisense
AACTTGTCCGCAACGACACTTCATT 314 139 884 Antisense
ACAACCTGTGGGTCACGCGTTGGTG 623 111 969 Antisense
TTCCCTACACAATCATCTACGACCA 98 697 1024 Antisense
CGTCCTCAATCAGCAATCCAGCAGT 592 237 1053 Antisense
GTCAACCAGTATACGGTGTCCGAGA 536 463 1102 Antisense
Sequence Source Affymetrix Proprietary Database