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[194054_s_at] ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX) /// ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)

Description F08A8.3 /REP_DB=WormBase Gene ID /WP=CE17635 /TR=O62138 /GB=CAB16865.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      6grp_highest_nonorm > 81      6grp_total > 91      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 861
1 2 3 4 range
A 309.6
(-0.7)
P 		680.1
(2.2)
P 		776.2
(3)
P 		12.9
(-3)
A 		763
B 375.1
(-0.3)
P 		571.5
(1.1)
P 		836.2
(3)
P 		8.9
(-3)
A 		827
C 324.9
(-0.8)
P 		562.1
(0.8)
P 		869.7
(3)
P 		14.7
(-3)
A 		855
avr 336.5
(-0.6) 		604.6
(1.4) 		827.4
(3) 		12.2
(-3) 		815

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 245.1
(-0.6)
P 		299.6
(1.2)
P 		255.8
(-0.2)
P 		352.2
(3)
P 		304.7
(1.4)
P 		173.1
(-3)
P 		179
B 264.8
(0.8)
P 		287.9
(1.9)
P 		304.1
(2.7)
P 		304.4
(2.7)
P 		310.2
(3)
P 		184.2
(-3)
P 		126
C 286
(1.5)
P 		286
(1.5)
P 		258.6
(-0.1)
P 		311.2
(3)
P 		284.2
(1.4)
P 		211
(-3)
P 		100
avr 265.3
(0.4) 		291.2
(1.6) 		272.8
(0.8) 		322.6
(3) 		299.7
(2) 		189.4
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 112.7
(0.3)
P 		147.6
(1.3)
P 		202.9
(3)
P 		1.9
(-3)
A 		201
B 119.6
(0.7)
P 		141.1
(1.4)
P 		193.8
(3)
P 		1.9
(-3)
A 		192
C 107.6
(-0.9)
P 		161.6
(0.2)
P 		303.1
(3)
P 		2.5
(-3)
A 		301
avr 113.3
(-0.1) 		150.1
(0.8) 		233.3
(3) 		2.1
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 45.2
(-2.7)
P 		106.5
(3)
P 		55.7
(-1.7)
P 		89.3
(1.4)
P 		92
(1.6)
P 		42.1
(-3)
P 		64
B 92.2
(-0.5)
P 		95.8
(-0.2)
P 		73.9
(-2.5)
P 		80.6
(-1.8)
P 		126
(3)
P 		68.7
(-3)
P 		57
C 106
(3)
P 		87.3
(0.4)
P 		65.8
(-2.6)
P 		62.6
(-3)
P 		92
(1.1)
P 		70.6
(-1.9)
P 		43
avr 81.1
(-0.1) 		96.5
(2) 		65.1
(-2.4) 		77.5
(-0.6) 		103.3
(3) 		60.5
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194054_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1182
Sequence Type Exemplar sequence
Representative Public ID F08A8.3 NCBI
Target Description F08A8.3 /REP_DB=WormBase Gene ID /WP=CE17635 /TR=O62138 /GB=CAB16865.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060863(11), NM_060862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060863 NCBI Caenorhabditis elegans F08A8.4 (F08A8.4) mRNA, complete cds. 11/11 None
NM_060862 NCBI Caenorhabditis elegans F08A8.3 (F08A8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000032491 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12950428:12959111:1 11/11 None
SNAP00000032481 ENSEMBL cdna:SNAP chromosome:CEL140:I:12955067:12959111:1 11/11 None
SNAP00000032482 ENSEMBL cdna:SNAP chromosome:CEL140:I:12959260:12962048:1 11/11 None
GENEFINDER00000032488 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12959260:12962048:1 11/11 None
F08A8.3 ENSEMBL cdna:known chromosome:CEL140:I:12955067:12959111:1 gene:F08A8.3 11/11 None
F08A8.4 ENSEMBL cdna:known chromosome:CEL140:I:12959145:12962132:1 gene:F08A8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12954997-12959042(+) 100.0 100.0
Public Domain and Genome References
Gene Title ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX)
Ensembl F08A8.3
F08A8.4
Entrez Gene 173164 Entrez gene
184167 Entrez gene
SwissProt O62138 EMBL-EBI
O62139 EMBL-EBI
WormBase CE17635 Wormbase
CE17636 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639943_AT acyl-Coenzyme A oxidase at 57D proximal dm
DROSGENOME1:141563_AT acyl-Coenzyme A oxidase at 57D proximal dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6635 fatty acid beta-oxidation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5777 peroxisome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3997 acyl-CoA oxidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16866 Hypothetical protein F08A8.4 [Caenorhabditis elegans] ref|NP_493264.1| F08A8.4 [Caenorhabditis elegans] 0.0
blast CAB16865 Hypothetical protein F08A8.3 [Caenorhabditis elegans] ref|NP_493263.1| F08A8.3 [Caenorhabditis elegans] 0.0
blast CAB16864 Hypothetical protein F08A8.2 [Caenorhabditis elegans] ref|NP_493262.1| F08A8.2 [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 2.0E-88
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-88
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 2.0E-91
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 7.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 9.0E-67
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 5.0E-68
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 6.3E-39
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 5.0E-68
Sequence
Target Sequence 
>C. ELEGANS:194054_S_AT
aaagaagctaggaccaatggtgtcatatctagcagctaaaggtggccaccctgatctatc
aagtctgaatggatatgtaacagctttcgagcatatggctagaaggcaggcttggaaagc
aacagagaaattcttgaaattgatggaaactggagaatcaagagaagtggcgtggaataa
atcagcagtggagttgactagagctagtcgtctacacacccgtctattcataatcgaagc
tttcatgagaagagtgtctcgaattgaagatattccagtgaaagaggttctaacagatct
tctccatcttcatgtcaactatgaactattggatgttgccacgtatgcactggaattcat
gtcatccactcagttggattatatcagagatcaactatatttatatctggagaagattcg
accaagtgcagtatctctagttgactctttccagattagtgatatgcaattgagatctgt
tcttggccgccgggatggtaatgtctacgagaatctcttcaagtgggcaaagtcgagtcc
cttgaacaaatctgatgttctaccgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAAGCTAGGACCAATGGTGTCA 387 113 1383 Antisense
AATGGTGTCATATCTAGCAGCTAAA 529 163 1398 Antisense
AGCTAAAGGTGGCCACCCTGATCTA 358 77 1416 Antisense
GCCACCCTGATCTATCAAGTCTGAA 446 279 1427 Antisense
ATGGATATGTAACAGCTTTCGAGCA 481 51 1451 Antisense
GCTTTCGAGCATATGGCTAGAAGGC 327 303 1465 Antisense
GCCGGGATGGTAATGTCTACGAGAA 51 285 1871 Antisense
AATCTCTTCAAGTGGGCAAAGTCGA 564 167 1894 Antisense
AAGTGGGCAAAGTCGAGTCCCTTGA 113 159 1903 Antisense
GTCGAGTCCCTTGAACAAATCTGAT 11 475 1914 Antisense
GAACAAATCTGATGTTCTACCGTCA 84 353 1926 Antisense
Sequence Source Affymetrix Proprietary Database