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[194051_s_at] 7TM chemoreceptor, srw family

Description T26E4.11 /REP_DB=WormBase Gene ID /WP=CE16482 /TR=O45843 /GB=CAB03438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family), Zinc finger, C4 type (two domains)
Cluster 6grp_total > 11      4grp_total > 04      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 3.5
(-2.9)
A 		2.9
(-2.9)
A 		1.8
(-3)
A 		70.4
(3)
A 		69
B 17.5
(3)
A 		7.6
(-0.7)
A 		1.4
(-3)
A 		5.7
(-1.4)
A 		16
C 18.6
(-1.4)
A 		2.9
(-2.9)
A 		1.5
(-3)
A 		67.4
(3)
A 		66
avr 13.2
(-1.5) 		4.5
(-2.6) 		1.6
(-3) 		47.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.5
(-1.1)
A 		2.8
(-1.7)
A 		8.5
(3)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		3.1
(-1.4)
A 		7
B 1.9
(-3)
A 		4.2
(-0.8)
A 		8
(2.9)
A 		3.2
(-1.7)
A 		8.1
(3)
A 		2.2
(-2.7)
A 		6
C 2.9
(-2.6)
A 		21.9
(3)
A 		3.2
(-2.5)
A 		1.4
(-3)
A 		3.1
(-2.5)
A 		1.5
(-3)
A 		21
avr 2.8
(-2.3) 		9.6
(3) 		6.6
(0.7) 		1.9
(-3) 		4.2
(-1.2) 		2.3
(-2.7) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.3
(-2.5)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		10.3
(3)
A 		10
B 5.6
(3)
A 		1.9
(-1.2)
A 		0.3
(-3)
A 		1.2
(-2)
A 		5
C 6.2
(0.1)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		11.4
(3)
A 		11
avr 4.4
(0.3) 		1.1
(-2.4) 		0.4
(-3) 		7.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-1.4)
A 		1
(-0.2)
A 		1.8
(3)
A 		0.3
(-3)
A 		0.4
(-2.6)
A 		0.8
(-1)
A 		2
B 0.7
(-3)
A 		1.4
(-1.4)
A 		2
(0)
A 		0.8
(-2.8)
A 		3.3
(3)
A 		0.8
(-2.8)
A 		3
C 1.1
(-2.3)
A 		6.7
(3)
A 		0.8
(-2.5)
A 		0.3
(-3)
A 		1
(-2.3)
A 		0.5
(-2.8)
A 		6
avr 0.8
(-2.3) 		3
(3) 		1.5
(-0.6) 		0.5
(-3) 		1.6
(-0.4) 		0.7
(-2.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194051_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14130
Sequence Type Exemplar sequence
Representative Public ID T26E4.11 NCBI
Target Description T26E4.11 /REP_DB=WormBase Gene ID /WP=CE16482 /TR=O45843 /GB=CAB03438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family), Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074540 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-49) (srw-49) mRNA, complete cds. 11/11 None
M01B2.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15250761:15252043:1 gene:M01B2.5 11/11 None
T26E4.11 ENSEMBL cdna:known chromosome:CEL140:V:15803334:15804823:1 gene:T26E4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15803333-15804823(+) 100.0 100.0
chrV:15251119-15252043(+) 72.38 72.38
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-49
Ensembl M01B2.5
T26E4.11
Entrez Gene 188937 Entrez gene
SwissProt O45843 EMBL-EBI
WormBase CE16482 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03438 Hypothetical protein T26E4.11 [Caenorhabditis elegans] ref|NP_506941.1| Serpentine Receptor, class W family member (srw-49) [Caenorhabditis elegans] 1.0E-162
blast T23638 hypothetical protein M01B2.5 - Caenorhabditis elegans 1.0E-102
blast CAB04370 Hypothetical protein F40D4.8 [Caenorhabditis elegans] ref|NP_507344.1| Serpentine Receptor, class W family member (srw-51) [Caenorhabditis elegans] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 7.6E-21
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 8.5E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506941.1 4 97-113,128-147,226-248,268-290
T26E4.11 4 97-113,128-147,226-248,268-290
Sequence
Target Sequence 
>C. ELEGANS:194051_S_AT
acaagatttcacaagctctgcacacgggattcgaatttttctccttatctgtcttatgaa
ctctccactttggtatcttcaaaacagattttctatcgatgaacaggagaaatggactac
tccaatcgaatgcctaaatttcactgaaaactccactcagattatctatttggaaaacag
tttttttttcaagataatcccatccatacttcttccactttcaaccatagtgttgctcta
tgagttaaagaaaattaaaaagctaacagcttctacaaactctagatccacagataacaa
tacgcgaactacaaaactggtgtgttttgttactataacatttttaatatcaacagttcc
acttggaatactctactttatagagatgatcttttttgatactgatggattggaaagtat
aattcgaaaaaactcttcaatatttaaactgatatctcttatcaatggaactatccattt
tctgatatgctttttcatgtcaacactgtatcggaaaactgtcaaagaaatgtttggaat
gcaacctcacaatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGATTTCACAAGCTCTGCACAC 703 113 375 Antisense
AGCTCTGCACACGGGATTCGAATTT 185 81 388 Antisense
ATTTTTCTCCTTATCTGTCTTATGA 417 15 409 Antisense
TTATCTGTCTTATGAACTCTCCACT 180 681 419 Antisense
GAACTCTCCACTTTGGTATCTTCAA 347 349 432 Antisense
TGGACTACTCCAATCGAATGCCTAA 553 547 487 Antisense
TCCACTTTCAACCATAGTGTTGCTC 308 589 588 Antisense
AGCTAACAGCTTCTACAAACTCTAG 292 79 635 Antisense
GGAACTATCCATTTTCTGATATGCT 623 529 841 Antisense
CTTTTTCATGTCAACACTGTATCGG 284 223 864 Antisense
GTTTGGAATGCAACCTCACAATGGA 384 451 906 Antisense
Sequence Source Affymetrix Proprietary Database