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[194050_s_at]

Description Y51A2C.1 /REP_DB=WormBase Gene ID /WP=CE16662 /TR=O45960 /GB=CAA16396.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=TRANSPOSABLE ELEMENT TCB1 TRANSPOSASE (TRANSPOSABLE ELEMENT BARNEY TRANSPOSASE)
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 33      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 11      4grp_total > 04      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 135.1
(-2.1)
P 		44.1
(-3)
P 		46.3
(-3)
P 		671.9
(3)
P 		628
B 165.2
(-0.6)
P 		100.9
(-2.2)
P 		68.9
(-3)
P 		305.9
(3)
P 		237
C 149.2
(-2.2)
P 		68.7
(-3)
P 		70.9
(-3)
A 		664.3
(3)
P 		596
avr 149.8
(-1.9) 		71.2
(-2.9) 		62
(-3) 		547.4
(3) 		485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 161.2
(-1.5)
P 		79.7
(-2.8)
P 		444.6
(3)
P 		65.3
(-3)
P 		179.6
(-1.2)
P 		87.4
(-2.7)
P 		379
B 205.7
(2.3)
P 		222.3
(3)
P 		128.6
(-1)
P 		155.1
(0.1)
P 		186.2
(1.4)
P 		82.9
(-3)
P 		139
C 81
(-2.8)
P 		511.2
(3)
P 		88
(-2.7)
P 		152.2
(-1.8)
P 		63.7
(-3)
P 		99.6
(-2.5)
P 		448
avr 149.3
(-1) 		271.1
(3) 		220.4
(1.3) 		124.2
(-1.9) 		143.2
(-1.2) 		90
(-3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 49.2
(-0.3)
P 		9.6
(-3)
P 		12.1
(-2.8)
P 		98.3
(3)
P 		89
B 52.7
(1.5)
P 		24.9
(-1.9)
P 		16
(-3)
P 		65.2
(3)
P 		49
C 49.4
(-1.1)
P 		19.7
(-3)
P 		24.7
(-2.7)
A 		112
(3)
P 		92
avr 50.4
(-0.3) 		18.1
(-3) 		17.6
(-3) 		91.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 29.7
(-2)
P 		28.4
(-2.1)
P 		96.8
(3)
P 		16.6
(-3)
P 		54.2
(-0.2)
P 		21.3
(-2.6)
P 		80
B 71.6
(2.5)
P 		74
(2.8)
P 		31.2
(-3)
P 		41.1
(-1.6)
P 		75.6
(3)
P 		30.9
(-3)
P 		45
C 30
(-2.6)
P 		156
(3)
P 		22.4
(-2.9)
P 		30.6
(-2.6)
P 		20.6
(-3)
P 		33.3
(-2.4)
P 		135
avr 43.8
(-1.4) 		86.1
(3) 		50.1
(-0.8) 		29.4
(-2.9) 		50.1
(-0.8) 		28.5
(-3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194050_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12975
Sequence Type Exemplar sequence
Representative Public ID Y51A2C.1 NCBI
Target Description Y51A2C.1 /REP_DB=WormBase Gene ID /WP=CE16662 /TR=O45960 /GB=CAA16396.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=TRANSPOSABLE ELEMENT TCB1 TRANSPOSASE (TRANSPOSABLE ELEMENT BARNEY TRANSPOSASE)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000000602 ENSEMBL cdna:SNAP chromosome:CEL140:I:14026926:14034330:1 11/11 None
GENEFINDER00000000607 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14030517:14031338:1 11/11 None
SNAP00000029126 ENSEMBL cdna:SNAP chromosome:CEL140:I:10536627:10537612:-1 11/11 None
GENEFINDER00000029135 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10536627:10537448:-1 11/11 None
GENEFINDER00000032608 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12489714:12490418:-1 11/11 None
SNAP00000006614 ENSEMBL cdna:SNAP chromosome:CEL140:II:13303073:13308852:1 11/11 None
GENEFINDER00000006656 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13308031:13308852:1 11/11 None
GENEFINDER00000006696 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12521176:12521997:1 11/11 None
SNAP00000012809 ENSEMBL cdna:SNAP chromosome:CEL140:II:7516864:7517936:-1 11/11 None
SNAP00000013023 ENSEMBL cdna:SNAP chromosome:CEL140:II:1935755:1936827:1 11/11 None
GENEFINDER00000013041 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1936006:1936827:1 11/11 None
SNAP00000016662 ENSEMBL cdna:SNAP chromosome:CEL140:II:6571434:6572506:-1 11/11 None
GENEFINDER00000016671 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6571434:6572255:-1 11/11 None
SNAP00000029310 ENSEMBL cdna:SNAP chromosome:CEL140:II:894483:895555:-1 11/11 None
GENEFINDER00000029317 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:894483:895304:-1 11/11 None
SNAP00000029510 ENSEMBL cdna:SNAP chromosome:CEL140:II:784749:785734:1 11/11 None
GENEFINDER00000029530 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:784913:785734:1 11/11 None
SNAP00000038990 ENSEMBL cdna:SNAP chromosome:CEL140:II:12750980:12752052:1 11/11 None
GENEFINDER00000039039 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12751231:12752052:1 11/11 None
SNAP00000028776 ENSEMBL cdna:SNAP chromosome:CEL140:III:12865305:12866377:-1 11/11 None
GENEFINDER00000028802 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12865305:12866377:-1 11/11 None
SNAP00000015832 ENSEMBL cdna:SNAP chromosome:CEL140:III:2119704:2120525:1 11/11 None
GENEFINDER00000015847 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2119704:2120525:1 11/11 None
SNAP00000018800 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2485383:2486018:-1 11/11 None
GENEFINDER00000018834 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2485383:2486018:-1 11/11 None
SNAP00000023383 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9685512:9686584:1 11/11 None
GENEFINDER00000023397 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9685763:9686584:1 11/11 None
SNAP00000028979 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13223953:13224366:-1 11/11 None
GENEFINDER00000028987 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13223953:13224297:-1 11/11 None
SNAP00000030829 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15484327:15485399:-1 11/11 None
GENEFINDER00000030918 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15484327:15485148:-1 11/11 None
SNAP00000000584 ENSEMBL cdna:SNAP chromosome:CEL140:V:16310334:16317171:1 11/11 None
GENEFINDER00000000588 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16314882:16317335:1 11/11 None
SNAP00000008152 ENSEMBL cdna:SNAP chromosome:CEL140:V:11291541:11292613:1 11/11 None
GENEFINDER00000008164 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11291792:11292613:1 11/11 None
SNAP00000014341 ENSEMBL cdna:SNAP chromosome:CEL140:V:1834429:1835494:-1 11/11 None
SNAP00000014343 ENSEMBL cdna:SNAP chromosome:CEL140:V:1836171:1837243:1 11/11 None
GENEFINDER00000014355 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1836422:1837243:1 11/11 None
GENEFINDER00000014356 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1834422:1835243:-1 11/11 None
SNAP00000015702 ENSEMBL cdna:SNAP chromosome:CEL140:V:3990591:3991004:1 11/11 None
GENEFINDER00000015715 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3990660:3991004:1 11/11 None
SNAP00000019510 ENSEMBL cdna:SNAP chromosome:CEL140:V:15909996:15911068:1 11/11 None
GENEFINDER00000019532 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15910247:15911068:1 11/11 None
SNAP00000028204 ENSEMBL cdna:SNAP chromosome:CEL140:V:3250741:3252489:-1 11/11 None
GENEFINDER00000028233 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3251327:3252238:-1 11/11 None
SNAP00000033462 ENSEMBL cdna:SNAP chromosome:CEL140:V:9893147:9896899:1 11/11 None
GENEFINDER00000033475 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9893216:9897209:1 11/11 None
SNAP00000034226 ENSEMBL cdna:SNAP chromosome:CEL140:V:3590585:3594678:1 11/11 None
GENEFINDER00000034238 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3590585:3591406:1 11/11 None
SNAP00000036947 ENSEMBL cdna:SNAP chromosome:CEL140:V:10187331:10192698:-1 11/11 None
GENEFINDER00000036967 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10188724:10191575:-1 11/11 None
SNAP00000042692 ENSEMBL cdna:SNAP chromosome:CEL140:V:17808647:17809719:1 11/11 None
GENEFINDER00000042701 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17808647:17809719:1 11/11 None
SNAP00000008608 ENSEMBL cdna:SNAP chromosome:CEL140:X:11311390:11312462:-1 11/11 None
GENEFINDER00000008621 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11311390:11315496:-1 11/11 None
SNAP00000027995 ENSEMBL cdna:SNAP chromosome:CEL140:X:7017452:7018524:-1 11/11 None
GENEFINDER00000028000 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7017452:7018273:-1 11/11 None
T27F6.9 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12489714:12490751:-1 gene:T27F6.9 11/11 A 
C48D1.6 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:13223953:13225025:-1 gene:C48D1.6 11/11 A 
T22F3.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3590334:3591399:1 gene:T22F3.1 11/11 A 
C50H2.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:9893117:9893560:1 gene:C50H2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl T27F6.9
C48D1.6
T22F3.1
C50H2.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68416 Hypothetical protein F18C5.7 [Caenorhabditis elegans] 0.0
blast F89402 protein Y94A7B.2 [imported] - Caenorhabditis elegans 0.0
blast AAB66191 Hypothetical protein T07D3.8 [Caenorhabditis elegans] 0.0
blast AAC46728 Hypothetical protein C28F5.5 [Caenorhabditis elegans] gb|AAK29917.1| Hypothetical protein Y48G9A.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003235 EMBL-EBI Nematode insulin-related peptide, beta type 7.9E-12
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.4E-30
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 7.2E-32
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 2.4E-28
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.1E-92
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.1E-10
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-33
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.4E-29
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.83
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0016
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.5E-12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.83
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0016
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.5E-12
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 3.6E-28
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0017
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0017
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-34
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000000602 1 5-24
SNAP00000000584 14 20-42,70-92,105-127,156-178,492-514,534-553,566-585,605-627,651-668,717-739,746-768,788-810,817-839,1208-1230
GENEFINDER00000000588 3 350-372,387-409,422-444
SNAP00000033462 7 459-481,493-515,535-557,577-599,621-643,664-686,696-718
GENEFINDER00000033475 7 460-482,494-516,536-558,578-600,622-644,665-687,697-719
Sequence
Target Sequence 
>C. ELEGANS:194050_S_AT
gatcctaagcatacttctcttcatgtgcgttcctggtttcaacgtcgtcgtgtgcatttg
ctcgattggccaagtcagtctccgcacttgaatccaatagagcatttgtgggaagagttg
gaaagacgtcttggaggtattcgggcttcaaatgcagatgccaaattcaaccagttggaa
aacgcttggaaagctatccccatgtcagttattcacaagctgatcgactcgatgccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTAAGCATACTTCTCTTCATG 184 417 547 Antisense
CCTAAGCATACTTCTCTTCATGTGC 377 267 550 Antisense
AGCATACTTCTCTTCATGTGCGTTC 706 77 554 Antisense
TTGCTCGATTGGCCAAGTCAGTCTC 45 689 604 Antisense
GAAAACGCTTGGAAAGCTATCCCCA 336 355 724 Antisense
ACGCTTGGAAAGCTATCCCCATGTC 584 89 728 Antisense
AAAGCTATCCCCATGTCAGTTATTC 36 125 736 Antisense
GCTATCCCCATGTCAGTTATTCACA 344 303 739 Antisense
TCCCCATGTCAGTTATTCACAAGCT 594 595 743 Antisense
GTTATTCACAAGCTGATCGACTCGA 695 447 754 Antisense
CAAGCTGATCGACTCGATGCCACGT 264 181 762 Antisense
Sequence Source Affymetrix Proprietary Database