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[194049_at]

Description T06H11.3 /REP_DB=WormBase Gene ID /WP=CE02333 /TR=Q22273 /GB=CAA90068.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=weak similarity to dihydrofolate reductase (Swiss Prot accession number P07382)
Cluster 6grp_total > 92      4grp_total > 35      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.8
(-1.4)
A 		11.7
(-1)
A 		7.3
(-3)
A 		20.8
(3)
A 		14
B 10.2
(2.8)
A 		10.4
(3)
A 		4.8
(-3)
A 		6.2
(-1.5)
A 		6
C 9.4
(-2.3)
A 		22.2
(3)
A 		7.6
(-3)
A 		9.1
(-2.4)
A 		15
avr 10.1
(-0.4) 		14.8
(3) 		6.6
(-3) 		12
(1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.8
(-1.6)
A 		5.4
(-3)
A 		10.6
(-0.8)
A 		8.6
(-1.6)
A 		19.5
(3)
A 		6.2
(-2.7)
A 		14
B 7.6
(0.6)
A 		10.5
(3)
A 		9.1
(1.9)
A 		6
(-0.6)
A 		5.1
(-1.4)
A 		3.1
(-3)
A 		7
C 14.2
(1.6)
A 		9.9
(-0.3)
A 		5.3
(-2.3)
A 		7.4
(-1.4)
A 		17.5
(3)
A 		3.6
(-3)
A 		14
avr 10.2
(0.6) 		8.6
(-0.3) 		8.3
(-0.5) 		7.3
(-1.1) 		14
(3) 		4.3
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.9
(3)
A 		2.5
(-1.2)
A 		1.9
(-3)
A 		3
(0.3)
A 		2
B 3.2
(3)
A 		2.6
(1.3)
A 		1.1
(-3)
A 		1.3
(-2.4)
A 		2
C 3.1
(-1)
A 		6.4
(3)
A 		2.6
(-1.7)
A 		1.5
(-3)
A 		5
avr 3.4
(1.7) 		3.8
(3) 		1.9
(-3) 		1.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		1.9
(-2.5)
A 		2.3
(-1.9)
A 		2.2
(-2)
A 		5.9
(3)
A 		1.5
(-3)
A 		4
B 2.6
(0.7)
A 		3.5
(3)
A 		2.2
(-0.4)
A 		1.6
(-2)
A 		2.1
(-0.7)
A 		1.2
(-3)
A 		2
C 5.3
(2.5)
A 		3
(-0.6)
A 		1.4
(-2.7)
A 		1.5
(-2.6)
A 		5.7
(3)
A 		1.2
(-3)
A 		5
avr 3.2
(0.5) 		2.8
(-0.3) 		2
(-1.7) 		1.8
(-2.1) 		4.6
(3) 		1.3
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17077
Sequence Type Exemplar sequence
Representative Public ID T06H11.3 NCBI
Target Description T06H11.3 /REP_DB=WormBase Gene ID /WP=CE02333 /TR=Q22273 /GB=CAA90068.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=weak similarity to dihydrofolate reductase (Swiss Prot accession number P07382)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171758
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000021210 ENSEMBL cdna:SNAP chromosome:CEL140:X:10124733:10125362:-1 11/11 None
GENEFINDER00000021216 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10124733:10125362:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171758 7/11 Cross Hyb Matching Probes A 
T06H11.1b 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10124732-10125362(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T24628 hypothetical protein T06H11.3 - Caenorhabditis elegans 2.0E-82
blast CAD44149 Hypothetical protein T06H11.1b [Caenorhabditis elegans] ref|NP_741880.1| UNCoordinated family member (unc-58) [Caenorhabditis elegans] 8.0E-40
blast CAE58784 Hypothetical protein CBG01983 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:194049_AT
agccaccaccagactcaaaatatagagtaatgtcaatcaatctaactatgaaattttggt
caaccgtattcgtcgcatgggcactccgaagtgtccgagagtctctgatccaagttgatc
cattggccgctgcacttgcacatcaggctcgaaagacaaatagtgtgccagctgtctcga
gaactccactgcttctacagttcactcctttcggaccacctctcagtgcgtgttgtctga
atatttttcctatctacactgaaaataacaaaactgcatggcgcgtttgtattgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCACCACCAGACTCAAAATATAG 551 83 89 Antisense
TCAACCGTATTCGTCGCATGGGCAC 383 631 148 Antisense
CATGGGCACTCCGAAGTGTCCGAGA 267 209 164 Antisense
GTGTCCGAGAGTCTCTGATCCAAGT 451 487 179 Antisense
TCCAAGTTGATCCATTGGCCGCTGC 219 587 197 Antisense
GCACTTGCACATCAGGCTCGAAAGA 670 315 220 Antisense
ATAGTGTGCCAGCTGTCTCGAGAAC 55 21 248 Antisense
TCGAGAACTCCACTGCTTCTACAGT 120 603 265 Antisense
CACCTCTCAGTGCGTGTTGTCTGAA 287 201 305 Antisense
GTCTGAATATTTTTCCTATCTACAC 626 471 323 Antisense
ACTGCATGGCGCGTTTGTATTGATT 202 99 361 Antisense
Sequence Source Affymetrix Proprietary Database