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[194047_s_at] Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (3 domains)

Description ZK792.5 /REP_DB=WormBase Gene ID /WP=CE03826 /TR=Q23591 /GB=CAA92631.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (3 domains)
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 76      6grp_total > 46      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1056
1 2 3 4 range
A 1650.3
(3)
P 		1184.1
(-0.7)
P 		904.3
(-3)
P 		1574.1
(2.4)
P 		746
B 1821
(3)
P 		981.4
(-3)
P 		1149.7
(-1.8)
P 		1352.4
(-0.3)
P 		840
C 1917.1
(3)
P 		861.6
(-3)
P 		1215.7
(-1)
P 		1356
(-0.2)
P 		1056
avr 1796.1
(3) 		1009
(-3) 		1089.9
(-2.4) 		1427.5
(0.2) 		787

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 683
1 2 3 4 5 6 range
A 1449
(3)
P 		1056
(-0.5)
P 		775.4
(-3)
P 		961.1
(-1.3)
P 		957.6
(-1.4)
P 		1060.8
(-0.5)
P 		674
B 1137.8
(0.4)
P 		1259
(1.8)
P 		1362.5
(3)
P 		1144.7
(0.5)
P 		834.4
(-3)
P 		1304.2
(2.3)
P 		528
C 966.3
(-1.1)
P 		1174.3
(0.8)
P 		990.7
(-0.9)
P 		1084
(-0)
P 		766.2
(-3)
P 		1404.5
(3)
P 		638
avr 1184.4
(1.9) 		1163.1
(1.6) 		1042.9
(-0.2) 		1063.3
(0.1) 		852.7
(-3) 		1256.5
(3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 406
1 2 3 4 range
A 600.9
(3)
P 		257
(-2.6)
P 		236.4
(-2.9)
P 		230.4
(-3)
P 		371
B 580.7
(3)
P 		242.4
(-3)
P 		266.4
(-2.6)
P 		288.2
(-2.2)
P 		338
C 634.6
(3)
P 		247.7
(-2.7)
P 		423.7
(-0.1)
P 		228.6
(-3)
P 		406
avr 605.4
(3) 		249
(-3) 		308.8
(-2) 		249.1
(-3) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 267.1
(-0.1)
P 		375.6
(3)
P 		168.9
(-3)
P 		243.8
(-0.8)
P 		289
(0.5)
P 		258.3
(-0.4)
P 		207
B 395.9
(0)
P 		419.1
(0.8)
P 		330.9
(-2.1)
P 		303.2
(-3)
P 		339
(-1.8)
P 		486.3
(3)
P 		183
C 358.2
(0.3)
P 		358.3
(0.3)
P 		252.2
(-2.2)
P 		218
(-3)
P 		247.9
(-2.3)
P 		470.2
(3)
P 		252
avr 340.4
(0.5) 		384.3
(2.2) 		250.7
(-3) 		255
(-2.8) 		292
(-1.4) 		404.9
(3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194047_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9638
Sequence Type Exemplar sequence
Representative Public ID ZK792.5 NCBI
Target Description ZK792.5 /REP_DB=WormBase Gene ID /WP=CE03826 /TR=Q23591 /GB=CAA92631.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069811 NCBI Caenorhabditis elegans ZK792.5 (ZK792.5) mRNA, complete cds. 11/11 None
SNAP00000023873 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11685047:11688087:-1 11/11 None
GENEFINDER00000023880 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11685047:11688675:-1 10/11 None
ZK792.5 ENSEMBL cdna:known chromosome:CEL140:IV:11684944:11688088:-1 gene:ZK792.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11685052-11688093(-) 100.0 100.0
Public Domain and Genome References
Gene Title Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (3 domains)
Ensembl ZK792.5
Entrez Gene 178103 Entrez gene
SwissProt Q23591 EMBL-EBI
WormBase CE03826 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92631 Hypothetical protein ZK792.5 [Caenorhabditis elegans] ref|NP_502212.1| ZK792.5 [Caenorhabditis elegans] 0.0
blast CAE62070 Hypothetical protein CBG06093 [Caenorhabditis briggsae] 1.0E-119
blast CAE62070 Hypothetical protein CBG06093 [Caenorhabditis briggsae] 1.0E-117
blast CAE62070 Hypothetical protein CBG06093 [Caenorhabditis briggsae] 1.0E-108
blast XP_394465 PREDICTED: similar to ENSANGP00000019913 [Apis mellifera] 4.0E-16
blast XP_394465 PREDICTED: similar to ENSANGP00000019913 [Apis mellifera] 4.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001313 EMBL-EBI Pumilio/Puf RNA-binding 4.5E-5
Pfam IPR001313 EMBL-EBI Pumilio/Puf RNA-binding 4.5E-5
Pfam IPR001313 EMBL-EBI Pumilio/Puf RNA-binding 4.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023880 2 20-39,46-68
Sequence
Target Sequence 
>C. ELEGANS:194047_S_AT
attctggtgtgttcctttcggttatccgatgtgctgcacgatatccatcatccgagaaaa
ccatgcttcaacaactgagaaaatatttccgcgcagcttcagaggcaaagaaaggacaat
ttttactcaacgtgcttactttgaatggatgtgatggaagcattttcgatactcagaagt
tcacacaaaagggtacaatgctcgtctcagaacttgtcaacttctcaaaaacgaaaacat
tggcaactggctttgagcaactcagtgagcaacaaattcaagaaatgtcatgtaacaagt
acacttctcgtttgattcaagctgttttggctagtaagactatgccagaagagatcaaag
agaagattattggtgcttttgataaaaattcttgggagacgcttatcactgatactttcg
gaagtcgagttttcgagaaaatttgggaatttgtagacgtaaagcgcaagcaggaaatca
tgaaagttcttgttggaattcataattcatccaagttctggaaatttgcaatgcttcgct
gcgatctttacctgttcagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTGGTGTGTTCCTTTCGGTTAT 280 11 1298 Antisense
TTCGGTTATCCGATGTGCTGCACGA 543 689 1314 Antisense
CTGCACGATATCCATCATCCGAGAA 219 237 1331 Antisense
TTCCGCGCAGCTTCAGAGGCAAAGA 189 699 1384 Antisense
GACAATTTTTACTCAACGTGCTTAC 615 361 1412 Antisense
AAAAGGGTACAATGCTCGTCTCAGA 486 131 1484 Antisense
GCTCGTCTCAGAACTTGTCAACTTC 405 299 1497 Antisense
GTACACTTCTCGTTTGATTCAAGCT 315 461 1596 Antisense
ATTCTTGGGAGACGCTTATCACTGA 281 9 1685 Antisense
AATTTGCAATGCTTCGCTGCGATCT 309 175 1820 Antisense
GCTGCGATCTTTACCTGTTCAGAAA 558 297 1835 Antisense
Sequence Source Affymetrix Proprietary Database