[Home] | [Total List]

[194045_at] Lectin C-type domain short and long forms, von Willebrand factor type A domain

Description F15D3.2 /REP_DB=WormBase Gene ID /WP=CE15849 /TR=O62171 /GB=CAB02952.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_total > 93      4grp_total > 33      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 1.8
(-3)
A 		10.4
(3)
A 		3.7
(-1.7)
A 		5.3
(-0.6)
A 		9
B 10.1
(-2.3)
A 		60
(3)
A 		22.5
(-1)
A 		3.2
(-3)
A 		57
C 7.3
(-3)
A 		8.6
(-2.8)
A 		38.4
(0.7)
A 		57.8
(3)
A 		51
avr 6.4
(-3) 		26.3
(3) 		21.5
(1.6) 		22.1
(1.7) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3455
1 2 3 4 5 6 range
A 9.5
(-3)
A 		7
(-3)
A 		3.9
(-3)
A 		1046.8
(-0.8)
P 		2832.7
(3)
P 		265.5
(-2.4)
P 		2829
B 2.7
(-3)
A 		36.7
(-2.9)
A 		8.1
(-3)
A 		896.3
(-1.4)
P 		3456.5
(3)
P 		187.2
(-2.7)
P 		3454
C 1.7
(-3)
A 		4
(-3)
A 		9.8
(-3)
A 		1199.1
(-0.3)
P 		2638.7
(3)
P 		225.7
(-2.5)
P 		2637
avr 4.6
(-3) 		15.9
(-3) 		7.3
(-3) 		1047.4
(-0.9) 		2976
(3) 		226.1
(-2.6) 		2971
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.6
(-3)
A 		2.3
(3)
A 		1
(-1.6)
A 		0.8
(-2.3)
A 		2
B 3.2
(-1.9)
A 		14.8
(3)
A 		5.2
(-1.1)
A 		0.7
(-3)
A 		14
C 2.4
(-3)
A 		2.5
(-2.9)
A 		13.4
(3)
A 		9.8
(1)
A 		11
avr 2.1
(-3) 		6.5
(3) 		6.5
(3) 		3.8
(-0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1404
1 2 3 4 5 6 range
A 1.8
(-3)
A 		2.5
(-3)
A 		0.9
(-3)
A 		265.5
(-1.1)
P 		854.8
(3)
P 		64.6
(-2.6)
P 		854
B 0.9
(-3)
A 		12.2
(-3)
A 		2
(-3)
A 		237.4
(-2)
P 		1404.3
(3)
P 		69.8
(-2.7)
P 		1403
C 0.6
(-3)
A 		1.2
(-3)
A 		2.5
(-3)
A 		241.1
(-1.3)
P 		853.9
(3)
P 		75.6
(-2.5)
P 		853
avr 1.1
(-3) 		5.3
(-3) 		1.8
(-3) 		248
(-1.6) 		1037.7
(3) 		70
(-2.6) 		1037
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2453
Sequence Type Exemplar sequence
Representative Public ID F15D3.2 NCBI
Target Description F15D3.2 /REP_DB=WormBase Gene ID /WP=CE15849 /TR=O62171 /GB=CAB02952.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060548 NCBI Caenorhabditis elegans F15D3.2 (F15D3.2) mRNA, complete cds. 11/11 None
SNAP00000000117 ENSEMBL cdna:SNAP chromosome:CEL140:I:11563595:11573904:-1 11/11 None
F15D3.2 ENSEMBL cdna:known chromosome:CEL140:I:11568759:11572509:-1 gene:F15D3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000127 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11568689-11572440(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms, von Willebrand factor type A domain
Ensembl F15D3.2
Entrez Gene 184525 Entrez gene
SwissProt O62171 EMBL-EBI
WormBase CE15849 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02952 Hypothetical protein F15D3.2 [Caenorhabditis elegans] ref|NP_492949.1| F15D3.2 [Caenorhabditis elegans] 0.0
blast CAB61012 Hypothetical protein F15D3.1a [Caenorhabditis elegans] emb|CAB61005.2| Hypothetical protein F15D3.1a [Caenorhabditis elegans] ref|NP_492946.1| F15D3.1a [Caenorhabditis elegans] sp|Q9TW65|DMD_CAEEL Dystrophin-1 1.0E-107
blast CAA10033 DYS-1 protein [Caenorhabditis elegans] 1.0E-107
blast CAE59673 Hypothetical protein CBG03095 [Caenorhabditis briggsae] 3.0E-80
blast CAA88984 Hypothetical protein ZK666.5 [Caenorhabditis elegans] ref|NP_496258.1| ZK666.5 [Caenorhabditis elegans] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.9E-28
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.9E-28
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 8.3E-15
Sequence
Target Sequence 
>C. ELEGANS:194045_AT
ttatcataactgttgcctattcgcaaagccatgacacacaacttttggaaaaactcggag
gaatcgcaacgaaagagtttaattttacaaatgacgatccggggttgatcgaaaaaattc
aagactctttgttgaaagcaaactgtttctgtccgaacagctggcaccaataccagccaa
aaggtacctgcattcaaccagtcactttgccagcttcatggagcattgctcaagcatcat
gccatcataagggaaacaatggtcacttggtcaatgagtacagcagagaaaaacacgatt
ttgtgatggcgattttgaagacttataaggaattccaacctacttataaatatcatatcg
ggctcaatggaaactgctcactttggaaatgggatcaggctagcggagaagaacaagtgc
aactacagggatggcaaatttgggctccggattttccgaggtgctcacctatgctcgaga
tgctcgagggggtgacctatgtaacggatggatggatcaatgttccatcaaatttctatg
cgaattatgtctgtgaaacatcaacttgtgacactgataactattgcgcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCATAACTGTTGCCTATTCGCA 34 679 521 Antisense
GCCTATTCGCAAAGCCATGACACAC 520 281 535 Antisense
TCTGTCCGAACAGCTGGCACCAATA 309 607 668 Antisense
AGGTACCTGCATTCAACCAGTCACT 520 57 702 Antisense
GTCACTTTGCCAGCTTCATGGAGCA 578 465 721 Antisense
GGAGCATTGCTCAAGCATCATGCCA 315 521 740 Antisense
TCGGGCTCAATGGAAACTGCTCACT 106 607 878 Antisense
TTTGGGCTCCGGATTTTCCGAGGTG 6 663 959 Antisense
TTCCGAGGTGCTCACCTATGCTCGA 113 699 974 Antisense
GATGCTCGAGGGGGTGACCTATGTA 310 387 999 Antisense
GTGACACTGATAACTATTGCGCAAG 66 483 1088 Antisense
Sequence Source Affymetrix Proprietary Database